PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00109g01110.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 281aa    MW: 32720.1 Da    PI: 8.4723
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00109g01110.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1354.5e-11384191
                      FAR1  1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85
                              +fY+e+A++ GF ++k + kk+ ++ + i  r++ C +  +r +++++           +  Cka +  ++ + +  wev+++  eH
  Peaxi162Scf00109g01110.1  3 DFYQEHARQNGFCITKYSCKKHsNEYDLISARRLSCHRARNRGKDQNS-----------NNRCKAGIYATLCTdRTSWEVQSVTIEH 78
                              6**************9998877366778999*******9999988776...........567*********99899*********** PP

                      FAR1 86 nHelap 91
                              nH+l p
  Peaxi162Scf00109g01110.1 79 NHDLEP 84
                              ***975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-7384IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.09241279IPR007527Zinc finger, SWIM-type
SMARTSM005755.9E-5254281IPR006564Zinc finger, PMZ-type
PfamPF044345.7E-6255278IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MVDFYQEHAR QNGFCITKYS CKKHSNEYDL ISARRLSCHR ARNRGKDQNS NNRCKAGIYA  60
TLCTDRTSWE VQSVTIEHNH DLEPRFTSLM PSHMKLSPAI RRDLVAANTA GVPVYLKDTF  120
WADISSTKRS KSIHPFLDQF INRKADLPTF AKQYEVAIKS KLEKELKEEE ISKETRLISL  180
TGSPWERQLR ACLTRNIYDL HRKQIQESVS FIYVGSDEQD EVEIFSVSDT RMGLNHARTD  240
YIMTVEYKRD GQHLDCSCKM FNTNGIICRH MILLLQHYGE Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7498216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-19FAR1-related sequence 5