PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00102g01858.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB
Protein Properties Length: 284aa    MW: 32223.8 Da    PI: 9.0394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00102g01858.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W++ Ed+ll +++k++G g+W++ +++ g+ R++k+c++rw +yl
  Peaxi162Scf00102g01858.1 14 KGPWSAKEDLLLTNYIKEHGEGQWRSLPNKAGLLRCGKSCRLRWMNYL 61
                              79******************************99************97 PP
2Myb_DNA-binding50.25.8e-1667112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg+ +++E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Peaxi162Scf00102g01858.1  67 RGNLSQDEEDLILRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                               7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.846961IPR017930Myb domain
SuperFamilySSF466891.61E-2811108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002492.9E-141461IPR001005SANT/Myb domain
CDDcd001672.06E-91661No hitNo description
PROSITE profilePS5129425.20162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2465117IPR009057Homeodomain-like
SMARTSM007179.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467112IPR001005SANT/Myb domain
CDDcd001675.76E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRAPCCAKE GLRKGPWSAK EDLLLTNYIK EHGEGQWRSL PNKAGLLRCG KSCRLRWMNY  60
LKPGIKRGNL SQDEEDLILR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLIKKLKSAG  120
IEPKVNKSFS KYCSKKQATT DKPRKKQVKK KKNKKIKDQP LVQDTSEPPQ VVFIPKPIRI  180
SSGHSRNYSV DQNVALSTSS SNSADNNNNI SNNEGKQAEV SFDPLFDEVV LDGCCELSPE  240
WSLPTDDSML EKVYEEYLQL ISEECFLQLD DPLAENASHH PMLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121185110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-78HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755202e-78HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261444.11e-126PREDICTED: myb-related protein 308-like
TrEMBLA0A314LBJ91e-124A0A314LBJ9_NICAT; Transcription repressor myb5
STRINGXP_009625117.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-65myb domain protein 5