PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00102g01633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | WRKY | ||||||||
Protein Properties | Length: 294aa MW: 33143 Da PI: 6.8601 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.8 | 2.6e-29 | 142 | 200 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK++kgs++prsYY+C+s+ gC ++k+ve+s ++p ++ +tY+ eHnh+ Peaxi162Scf00102g01633.1 142 SDKWCWRKYGQKPIKGSPYPRSYYKCSSSkGCLARKQVEQSFTEPGIFLVTYTAEHNHS 200 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-30 | 127 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.238 | 136 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-25 | 138 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-34 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 143 | 199 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSQLCAGLES DNWCLQAVVR GSSTSNFQQD FDPKSCFSLL DMSTIDHHFA LSDHQTTAVL 60 SDELEQLYKP FYPIDRQASV TSSISSPNKE VKEEPRKFVQ LEEPKESNFV VTVAASYVPK 120 YKKRKNEQKR VVHQVKADDL SSDKWCWRKY GQKPIKGSPY PRSYYKCSSS KGCLARKQVE 180 QSFTEPGIFL VTYTAEHNHS QPTRRNSLAG IIRNKFPTSS PSSPKTAKSQ VSIATHGSTS 240 DSVECPNIKI KQEIKDEYNI VIEGSDESEF ADMFGEDFYS GLEDLTEFKS SLGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-18 | 139 | 202 | 15 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-18 | 139 | 202 | 15 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764282.1 | 4e-97 | PREDICTED: probable WRKY transcription factor 29 | ||||
Refseq | XP_016483102.1 | 4e-97 | PREDICTED: probable WRKY transcription factor 29 | ||||
TrEMBL | A0A1S4B2E5 | 9e-96 | A0A1S4B2E5_TOBAC; probable WRKY transcription factor 29 | ||||
TrEMBL | A0A1U7V812 | 9e-96 | A0A1U7V812_NICSY; probable WRKY transcription factor 29 | ||||
STRING | XP_009764282.1 | 2e-96 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5781 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 9e-52 | WRKY family protein |