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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00102g00926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 636aa MW: 74744.6 Da PI: 9.0407 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 429 | 470 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r r T+eE e + ++++++G++ Wk a ++g R + ++ + w+ Peaxi162Scf00102g00926.1 429 RRRYTEEELEMIRKYHREHGPK-WKVLADELG--RHGVHVTDAWR 470 6799****************99.********8..88888876666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.5 | 203 | 250 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.17E-6 | 204 | 265 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.249 | 204 | 248 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 206 | 257 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.3E-8 | 207 | 265 | No hit | No description |
PROSITE profile | PS50090 | 7.631 | 249 | 317 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.067 | 253 | 319 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-7 | 258 | 318 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.085 | 319 | 372 | IPR017877 | Myb-like domain |
SMART | SM00717 | 43 | 323 | 374 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.026 | 428 | 475 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 5.993 | 429 | 472 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.75E-5 | 429 | 485 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-7 | 431 | 483 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.5E-9 | 433 | 489 | No hit | No description |
PROSITE profile | PS50090 | 7.863 | 473 | 541 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0026 | 477 | 543 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-8 | 484 | 541 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.11E-5 | 521 | 605 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.934 | 543 | 596 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MVFGDENMLM MLEKKSKKRK NKDATNVSGA TKGEEKIETK ELRASEDRDF KRKKERGGGK 60 HPGKSSKDNC EDVVKNEVKR KKNEEEAMHD ALLDTNTIAH NSVIGSQENK VFETLSEVSC 120 GNAIDKVKRK KRKTEKRKKE DAQIDILTAV NQGDASTIEE IEDSKTDNAN IRKRKRKKTK 180 LKHNSEDLPH ERSEKRRLFR MGEKRKWTDE EYEMVRKFHG EHGPKWRVLA DELGKHSIHV 240 GNAWQRIKLA NRKKGSWAQE EIQTLFDLVN TDLQLKLHEE KKSKHGMLRD NICWTAISDR 300 LSTRISQHCC NKWYRQLTSP MVATGEWADT DDYRLIDSLF ELDASCIEDV DWDNLLDHRE 360 GELCRKRWNQ MVRQLSKHEN KSFADQVDVL AKRYRPDLEL PTQSKEHPDY TTPLTISQRA 420 PKLFLMGERR RYTEEELEMI RKYHREHGPK WKVLADELGR HGVHVTDAWR RIKLARKKGN 480 WSQEEMQTLF NLVNTDLQLK LHEEKKSKHG MLRDNICWSA ISDRLTTRDN STCCNKWYRQ 540 LTSPMVATGE WADTDDYRLI GTLFELDASC LEDVDWDDLL DHRPGELCRK RWNQMVRQLS 600 HHENKSFAEQ VEVLAKRYRP ELVGAREAWD NKPVVP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 138 | KRKKRKTEKRKK |
2 | 171 | 176 | RKRKRK |
3 | 171 | 177 | RKRKRKK |
4 | 173 | 177 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793086.1 | 1e-137 | PREDICTED: cyclin-D-binding Myb-like transcription factor 1 | ||||
TrEMBL | A0A1U7XTX3 | 1e-135 | A0A1U7XTX3_NICSY; cyclin-D-binding Myb-like transcription factor 1 | ||||
STRING | XP_009793086.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-81 | MYB_related family protein |