PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00102g00108.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 282aa MW: 32116.3 Da PI: 8.5446

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00102g00108.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	11	32	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C++ Fs+ L H+r+H Peaxi162Scf00102g00108.1 11 SCKVCSRKFSSGKALGGHMRSH 32 6********************9 PP
2	zf-C2H2	11.4	0.00099	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C+k+F+ + L +H +H Peaxi162Scf00102g00108.1 164 YQCDICNKVFKCSQALGSHKLMH 186 9**********999999998887 PP
3	zf-C2H2	15	7.3e-05	210	232	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cgk F + L rH ++H Peaxi162Scf00102g00108.1 210 HECPFCGKIFGSAQALGRHKSSH 232 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-9	10	32	No hit	No description
PROSITE profile	PS50157	10.014	10	37	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.3	10	32	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	7.9E-9	12	32	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.28E-9	159	186	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-4	162	187	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.91	164	191	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.5E-5	164	187	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	164	186	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	166	186	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.5E-5	207	234	No hit	No description
PROSITE profile	PS50157	9.93	210	232	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.0E-6	210	232	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0042	210	232	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	212	232	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MLLRTMDKYK SCKVCSRKFS SGKALGGHMR SHLMPLPPKT PPQDQDSGGH SESTLSLYSS 60 ENQEEEEEEI QEKNLGYGLR ENPRKSFRIV DPEFLEDQES DTEPTRKSRS KRNGKMQAKD 120 CSLSYSKFSD EDIAMCLMKL SKDTWTSRND TNNKLELRKK QRKYQCDICN KVFKCSQALG 180 SHKLMHKKRI SEGESLQEKQ RQVSVQHNLH ECPFCGKIFG SAQALGRHKS SHILSTSTTE 240 CSSLKLGDSL MVSNFGKFPS GFIDLNMPAP MEDEEYFYKN GG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016575121.1	4e-85	PREDICTED: zinc finger protein ZAT1
TrEMBL	A0A1U8GV47	9e-84	A0A1U8GV47_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZA42	9e-84	A0A2G2ZA42_CAPAN; zinc finger protein ZAT1
STRING	XP_009758380.1	8e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1095	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-35	C2H2-like zinc finger protein