PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00102g00086.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Trihelix

Protein Properties

Length: 389aa MW: 43614 Da PI: 9.3284

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00102g00086.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.9	5.3e-18	33	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt++e laLiea+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ Peaxi162Scf00102g00086.1 33 CWTQEEALALIEAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPPKTSAQCRHKMEKLRQRYRAEKQRSLVNpNGRFFSSWF 117 8**********************************97776677778999****************9987764566778999 PP trihelix 81 yfdqle 86 ++d+++ Peaxi162Scf00102g00086.1 118 FYDNMD 123 999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-19	32	125	No hit	No description
PROSITE profile	PS50090	6.644	34	94	IPR017877	Myb-like domain
SMART	SM00595	5.2E-10	41	130	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MTSPNIDTTT TTAVTETTTA APSPPVRRFP PPCWTQEEAL ALIEAYRERW YALRRGYLRT 60 ADWDAVAAAV TSRCPDASPP KTSAQCRHKM EKLRQRYRAE KQRSLVNPNG RFFSSWFFYD 120 NMDAMENNTT VSAIRSNYQI NEQPSGGGDG YAMKTIIDHN LLKLKINNVP KDDIRSHTNL 180 MLNNHGVVGR NADKSNYGSR IPNGYSPYMA MGYEQPHDGE FGSSVRMKAK RFNGSSNNAG 240 FDCDEGSEYN GSGNGNGSDG FHHLRNMMGG VSSSRRTSYG GGNVEMNNDS RFSSPGVSRL 300 GKKGVKRGRV DPMEEMVLSI KLLGEGFMKM EKMKMEMAQE VEQMRMEMEM KRNEVILESQ 360 KQLVEAFVKV LSEVNKNNKN VKTVSPDES

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MTSPNIDTTT TTAVTETTTA APSPPVRRFP PPCWTQEEAL ALIEAYRERW YALRRGYLRT  60
ADWDAVAAAV TSRCPDASPP KTSAQCRHKM EKLRQRYRAE KQRSLVNPNG RFFSSWFFYD  120
NMDAMENNTT VSAIRSNYQI NEQPSGGGDG YAMKTIIDHN LLKLKINNVP KDDIRSHTNL  180
MLNNHGVVGR NADKSNYGSR IPNGYSPYMA MGYEQPHDGE FGSSVRMKAK RFNGSSNNAG  240
FDCDEGSEYN GSGNGNGSDG FHHLRNMMGG VSSSRRTSYG GGNVEMNNDS RFSSPGVSRL  300
GKKGVKRGRV DPMEEMVLSI KLLGEGFMKM EKMKMEMAQE VEQMRMEMEM KRNEVILESQ  360
KQLVEAFVKV LSEVNKNNKN VKTVSPDES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	2e-66	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006362480.1	1e-146	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0V0IKW1	1e-146	A0A0V0IKW1_SOLCH; Putative trihelix transcription factor ASIL2-like
STRING	PGSC0003DMT400052836	1e-146	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12774	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-29	Trihelix family protein