PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00101g00171.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Trihelix

Protein Properties

Length: 490aa MW: 56878 Da PI: 6.2614

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00101g00171.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.4	1.4e-21	382	464	1	83
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk.rykkikegekkrtsessstcpyfd 83 rW++ ev aLi++r+++e+++++ g+ k+ lWee+sk m++ gf+rs+ +Ckekwen++k kk+ke+ +++ + +c+ fd Peaxi162Scf00101g00171.1 382 RWPQAEVDALIQIRTSLESKFQEpGSTKGVLWEEISKSMASMGFHRSARRCKEKWENVHKcSVKKTKEITREQ--LNDGNCSTFD 464 8*******************8799******************************995689999999985..4444688887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.085	375	440	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.0E-4	377	443	IPR009057	Homeodomain-like
SMART	SM00717	0.006	379	442	IPR001005	SANT/Myb domain
Pfam	PF13837	3.0E-15	381	463	No hit	No description
CDD	cd12203	3.98E-21	381	441	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MQSNFEMAGI HHQRNQPPQM EQHQQQQPRF IVENASTSSP FFPINPNYHH FSQQQQQQQA 60 HPHILQQIHH LPFTQQFFQY QHPNYRSILD QQQQQQHQEI RALEASPEFF PLSFKLGMED 120 SSTKGGSCEG ERQEDALIRG SEQYCTEARQ TSLAVSHCWQ NQEDSAIKQP FWKPLCAEFS 180 NGNNNNSNES ENKLQEVDQE MYSTEEIIRH GQQQHEQHHI IKSLEDTSKC RVVFGELEAI 240 YATKANADNA AAATTTNIHR IASESVLTAE DLPMMKEGRS NSMARFFESL VKKLVNHQEN 300 LQRRFMETIE RLDQERKERE EAWREQELAK VQKETAARAH ERTLALSREA TLVSYLEKLT 360 GQKINFHEDR NVTSLEKLSN KRWPQAEVDA LIQIRTSLES KFQEPGSTKG VLWEEISKSM 420 ASMGFHRSAR RCKEKWENVH KCSVKKTKEI TREQLNDGNC STFDHENVEN KNGSGKEDME 480 ELKEGDKSES

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MQSNFEMAGI HHQRNQPPQM EQHQQQQPRF IVENASTSSP FFPINPNYHH FSQQQQQQQA  60
HPHILQQIHH LPFTQQFFQY QHPNYRSILD QQQQQQHQEI RALEASPEFF PLSFKLGMED  120
SSTKGGSCEG ERQEDALIRG SEQYCTEARQ TSLAVSHCWQ NQEDSAIKQP FWKPLCAEFS  180
NGNNNNSNES ENKLQEVDQE MYSTEEIIRH GQQQHEQHHI IKSLEDTSKC RVVFGELEAI  240
YATKANADNA AAATTTNIHR IASESVLTAE DLPMMKEGRS NSMARFFESL VKKLVNHQEN  300
LQRRFMETIE RLDQERKERE EAWREQELAK VQKETAARAH ERTLALSREA TLVSYLEKLT  360
GQKINFHEDR NVTSLEKLSN KRWPQAEVDA LIQIRTSLES KFQEPGSTKG VLWEEISKSM  420
ASMGFHRSAR RCKEKWENVH KCSVKKTKEI TREQLNDGNC STFDHENVEN KNGSGKEDME  480
ELKEGDKSES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258586.1	1e-179	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A314LHD4	1e-178	A0A314LHD4_NICAT; Trihelix transcription factor gt-2
STRING	XP_009782860.1	1e-175	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-37	Trihelix family protein