PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00101g00099.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 525aa    MW: 57774.9 Da    PI: 9.1189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00101g00099.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05110132123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peaxi162Scf00101g00099.1 110 FVCEICNKGFQRDQNLQLHRRGH 132
                               89*******************88 PP
2zf-C2H211.80.00074187209123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k +  +s+ k H + +
  Peaxi162Scf00101g00099.1 187 WKCEKCSKKYAVQSDWKAHSKIC 209
                               58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-5109132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-7109132No hitNo description
PfamPF121718.4E-5110132IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.017110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949110132IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SMARTSM0035590152182IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-5175208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.97E-7182207No hitNo description
SMARTSM00355140187207IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MMSGDGLSSL PFIQDPNNSN SNPSSSNNNP NPTSNPSAKR KRNLPGKPGK QVFTYINMII  60
FKSYSTFYCF VIIDTFFLGT KTLVVVVCLT DPDAEVIAMS PKSLMATNRF VCEICNKGFQ  120
RDQNLQLHRR GHNLPWKLKQ RNKLEVVKKK VYICPEKTCI HHDPSRALGD LTGIKKHYSR  180
KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TREYKCDCGT LFSRKDSFIT HRAFCDALAE  240
ESARFTVPST TNLNFMRNEL LNGGISNLQH SGNSQFGNSL FRPEFMGLGL DPTINQQLNV  300
DHGQKPRMPI WLENPNSVNS NDFLVATSSS TNNLPHDQLV QMASHNQHWF TNAGGGDDSG  360
IGSSSSFLPR VLKEEEDNKR NLSETLNSMY YNSHPQETTT TTPAAHMSAT ALLQKAAQMG  420
STRSNSALFG NGFGLMGSSF SKSSIGQGQF AAEDQNLNNG LMMMNSPSAA STLTASVNNS  480
SSLDNASGKN LLDPFFNKGK QVNLGGSEAI DGSLTRDFLG VGGNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36183252372Zinc finger protein JACKDAW
5b3h_F2e-36183252372Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-123HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789501.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_016442367.10.0PREDICTED: protein indeterminate-domain 9-like isoform X2
TrEMBLA0A1S3XRQ40.0A0A1S3XRQ4_TOBAC; protein indeterminate-domain 9-like isoform X2
TrEMBLA0A1U7XIP20.0A0A1U7XIP2_NICSY; zinc finger protein JACKDAW-like
STRINGXP_009789501.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.13e-95C2H2-like zinc finger protein