PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00096g00099.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

Protein Properties

Length: 263aa MW: 29464.4 Da PI: 7.7729

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00096g00099.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.7	4e-32	52	162	1	99
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 f+k+ltpsdv+k++rlv+pk++ae++ + + e+++ l++ede g+ W+++++y+++s++yvltkGW++Fvk+++ Peaxi162Scf00096g00099.1 52 FEKALTPSDVGKLNRLVIPKQHAEKYfplnstttnndtNDSGEKGFLLSFEDELGKIWKFRYSYWNSSQSYVLTKGWSRFVKEKK 136 99*************************99999888844445899*********************************** PP --TT-EEEEEE-SSSEE..EEEEE-S CS B3 74 LkegDfvvFkldgrsefelvvkvfrk 99 L++gD+v+F+++ +++ + +++++r+ Peaxi162Scf00096g00099.1 137 LDAGDVVLFERHVSDGDRHFIGWRRR 162 ********6644666679999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-40	43	163	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-30	47	157	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-27	50	156	No hit	No description
Pfam	PF02362	2.3E-29	52	163	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.029	52	162	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-25	52	163	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSINHISSEL LLPQTYFSKQ QHYYIMEPST RPKSSSPKHT NENAEIPKEH LFEKALTPSD 60 VGKLNRLVIP KQHAEKYFPL NSTTTNNDTN DSGEKGFLLS FEDELGKIWK FRYSYWNSSQ 120 SYVLTKGWSR FVKEKKLDAG DVVLFERHVS DGDRHFIGWR RRNTAGGTTV APPGSGGGGW 180 GQVCYGGNTY PYAGVPYQPA GRGDQMQNQT GPNGNNTRRQ VRLFGVNLAE CEVDDSSWSE 240 PSTPDGSFTS SHHQQSHESQ GQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	8e-51	48	166	4	117	B3 domain-containing transcription factor NGA1
5os9_B	8e-51	48	166	4	117	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761495.1	1e-117	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	1e-64	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	A0A1U7VI14	1e-116	A0A1U7VI14_NICSY; B3 domain-containing protein At2g36080
STRING	XP_009761495.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-65	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]