PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00089g01735.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 324aa    MW: 36950.3 Da    PI: 4.6275
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00089g01735.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.15.3e-072693032155
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                               k +yp++ ++  L +++gL+ +q+ +WF N+R ++
  Peaxi162Scf00089g01735.1 269 KWPYPTEGDKIYLVESTGLDPKQINNWFINQRKRH 303
                               569*****************************885 PP
2ELK353.2e-12222241120
                       ELK   1 ELKhqLlrKYsgyLgsLkqE 20 
                               E+K+ L+rKYsgy++sLkqE
  Peaxi162Scf00089g01735.1 222 EIKDKLMRKYSGYISSLKQE 241
                               89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-1578122IPR005540KNOX1
PfamPF037904.8E-2080121IPR005540KNOX1
SMARTSM012562.7E-21129180IPR005541KNOX2
PfamPF037913.1E-22134178IPR005541KNOX2
PROSITE profilePS5121310.51222242IPR005539ELK domain
PfamPF037891.7E-9222241IPR005539ELK domain
SMARTSM011881.8E-6222243IPR005539ELK domain
PROSITE profilePS5007110.77243306IPR001356Homeobox domain
SMARTSM003893.6E-10245310IPR001356Homeobox domain
SuperFamilySSF466893.85E-18245318IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-27248308IPR009057Homeodomain-like
CDDcd000864.87E-12248307No hitNo description
PfamPF059202.5E-16263302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEIYEFGSS SSSSAACNYY LHPADFGSSP AFCDGVVPMG FGSVNIMTRE TTFSEVSIVD  60
KIGTTSSSNL QEHQDETMNI RAKISSHPLY PKVLRSYIDC QKVGAPSEIV NMLDNIVQEN  120
DVYKKSSNAL NRLTDDPELD EFMETYCEVL AKFKSDLARP FNEATIFLNN IETQLSNLWI  180
AAPTTSNIIS DELGAEPEEE NDITGADGEA DEQSNDMCRE SEIKDKLMRK YSGYISSLKQ  240
EVCNKNNKKG KLPKEARQIL LNWWTCHYKW PYPTEGDKIY LVESTGLDPK QINNWFINQR  300
KRHWKPSENM QYMVMEHIHG HFSD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4095450.0GQ409545.1 Petunia x hybrida HERMIT-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244737.11e-153PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ84JS67e-92KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLE2CZB80.0E2CZB8_PETHY; HERMIT-like protein 1
STRINGXP_009595315.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-94KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]