PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00087g00093.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 506aa MW: 56174.7 Da PI: 6.1254 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 2e-13 | 322 | 367 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +K++Ka+ L Av YI++L Peaxi162Scf00087g00093.1 322 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVAYINEL 367 799***********************8.....8***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.7E-54 | 27 | 217 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 1.27E-17 | 310 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.03E-14 | 316 | 371 | No hit | No description |
PROSITE profile | PS50888 | 17.174 | 318 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-16 | 322 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.4E-11 | 322 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-16 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MDELNVSSSF SIPTLLSQGN NQPFPSLQQR LQYILKGQTD SWAYAIFWQT SNDDDGRLFL 60 AWGDGHFHGT KMRKGLFGAN NKGSSQQSER KNVIKGIQAL IGDNLDGSNN NINGDNIGLV 120 EDGTDVTDAE WFYVMSLAQS FSFGDGVPGK AFSSGSFVWL TGAQQLQFYS CERAKEAHIH 180 GINTLVCIPT SCGVLELGSS DLIKENWNLV QQVKSLFSST HENGHIEKNI SFADIGLVTG 240 LQEDCQKFND HDDNNSNDNN NNTRTKKTKT GETTVAAATV SVTFQDSDHS DSDCQLLDKP 300 VEKKTPKKRG RKPGVSREAP LNHVEAERQR REKLNHRFYA LRSVVPHVTK MDKASLLSDA 360 VAYINELRAK VDELELQVTS KSESKHRKLK IESMDSTTVD NMSTTTSVDQ IKPNNCSSAS 420 FGQNNLSLEV EVRILGPDAM IRVQSENVNY PSARLMRALQ ELELHVHHAS ISSVNDIMLQ 480 DIVVKVPQEL KTDDGLRSAL LRCLEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-38 | 26 | 217 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-38 | 26 | 217 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-38 | 26 | 217 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-38 | 26 | 217 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016508165.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
TrEMBL | A0A1S4D3Z6 | 0.0 | A0A1S4D3Z6_TOBAC; transcription factor MYC3-like | ||||
STRING | XP_009604694.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-79 | bHLH family protein |