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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00087g00075.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 420aa MW: 47324.2 Da PI: 6.631 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.2 | 1.5e-13 | 256 | 302 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RRd++N++f Lr+++P+ ++++Ka+ L Av YI++L Peaxi162Scf00087g00075.1 256 LNHVEAERQRRDKLNHRFYALRSVVPHV-----TRMDKASLLSDAVAYINEL 302 5899***********************8.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.3E-11 | 28 | 72 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Pfam | PF14215 | 2.2E-29 | 73 | 163 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.028 | 253 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.82E-14 | 253 | 306 | No hit | No description |
SuperFamily | SSF47459 | 8.51E-18 | 254 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-11 | 257 | 302 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.3E-17 | 257 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-16 | 259 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MDELIFSSSS FLSIPALFSQ GNNQPSILQQ KLQYILKNQT DSWTYGIFWQ TSNDDDGRLF 60 LSWDDGHFHG TNKDVEWFYV MSLVHSFSVD EGVLGKAFST GSFVWLTGPQ QLLFCSCKRA 120 KEAHVHGVKT LVCIPTSNGV LELGSVDIIK ENWSLVQQAK SLFSSDHHEG GPVQFVNGLQ 180 EDGQNFENNS SKKEEPRQKK YEEVATSDPV SFPDAEQSDS DCILLDHPVQ KSRAASKIRA 240 SKKRGRVTRE GCDKSLNHVE AERQRRDKLN HRFYALRSVV PHVTRMDKAS LLSDAVAYIN 300 ELKAKVDQLE SKLHSNSESV DNQSTTNSSP TLFRPIKKQT LEIEVKIMGP EDAMIRVQSE 360 NMNNVSTRLM RALQDLELYV HHASISNVNN IVLQDIVVRV PQGLKTEDGL KAALLRSFDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-24 | 28 | 164 | 9 | 193 | Transcription factor MYC3 |
4rqw_B | 1e-24 | 28 | 164 | 9 | 193 | Transcription factor MYC3 |
4rs9_A | 1e-24 | 28 | 164 | 9 | 193 | Transcription factor MYC3 |
4yz6_A | 1e-24 | 28 | 164 | 9 | 193 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016462596.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A1S3ZE82 | 0.0 | A0A1S3ZE82_TOBAC; transcription factor MYC2-like | ||||
STRING | XP_009592442.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-72 | bHLH family protein |