PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00083g00169.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family GATA
Protein Properties Length: 316aa    MW: 34648.9 Da    PI: 6.7056
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00083g00169.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31.1e-18237271135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Peaxi162Scf00083g00169.1 237 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 271
                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.7E-8510315IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.767231267IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-16231285IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14233294No hitNo description
Gene3DG3DSA:3.30.50.107.0E-15235269IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.30E-14236284No hitNo description
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16237271IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESALKSSCM LPSELKLTQK EAIHGDDMWA TTGQNVVSGD DFFVDDLLDF SNGFVENEEE  60
MKQEDENNNV VKETEDKDKV VISLPVVKQD DFASPLPVSE LTVPGDDLES LEWLSHFVED  120
SFCGYSLTGK LPVKPVENGE NPVQEKTCFT TPVQTKARTK RGRTSVRVWP TCSGSLTESS  180
SSSSSSSTTT MSSSPANHWM FYPTPVHTAE SAGKPVVKKA KKKPGTGSGP AQHARRCSHC  240
GVQKTPQWRA GPMGAKTLCN ACGVRFKSGR LLPEYRPACS PTFSSELHSN NHRKVLEMRR  300
KKEGDESGLA QPVQSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216223VKKAKKKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761911.11e-126PREDICTED: GATA transcription factor 5
RefseqXP_016446822.11e-126PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH579e-77GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S3Y4M41e-124A0A1S3Y4M4_TOBAC; GATA transcription factor
TrEMBLA0A1U7VAA21e-124A0A1U7VAA2_NICSY; GATA transcription factor
STRINGXP_009761911.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-69GATA transcription factor 5