PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00081g01616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 354aa MW: 39656.7 Da PI: 5.7649 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 280 | 320 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Peaxi162Scf00081g01616.1 280 RKRREKINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 320 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.224 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-14 | 272 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-13 | 275 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-11 | 276 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.50E-11 | 279 | 324 | No hit | No description |
Pfam | PF00010 | 1.0E-7 | 280 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MEPIVGAFFD EEWESLSKLF STELHVDHGL FSTNEHHEAN GNNFNYFSQE SSITSCGSDG 60 MFLSSNPSHE HLHHYSNNID IDVNNFLQVA INNNPDDQSI DFFAMDNKSI DNISVNPDDT 120 RHMSSQEEMV CDQQLVNAGI ISPVSSKEMQ LKRKFNKVSY QSSAKDQKVK EELPENPKKK 180 SRGSQDAQKT KKKAQPRGKK NQKTITQTNN EEGDQEETNT EANQNGHSSS CCSSEDDSNA 240 SQELNGGAIS SKSKGSALNL SGKSRASRGA ATDPQSLYAR KRREKINERL RILQNLVPNG 300 TKVDISTMLE EAVNYVKFLQ LQIKLLSSDE HWMYAPLAYH GMDIGLYQQM LPSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257512 | 4e-55 | KP257512.1 Salvia miltiorrhiza clone 79 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629598.1 | 1e-157 | PREDICTED: transcription factor bHLH85-like | ||||
TrEMBL | A0A1S4C825 | 1e-155 | A0A1S4C825_TOBAC; transcription factor bHLH85-like | ||||
STRING | XP_009629598.1 | 1e-156 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA639 | 22 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 5e-53 | bHLH family protein |