PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00071g02210.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 531aa    MW: 61531.2 Da    PI: 7.9832
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00071g02210.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.72.6e-2071164190
                      FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 
                               ++Y ++Ak++GFsvr+++   s +++  i++r++vC + g+++++k ++++++r r+++r++C+ak+ v ke      +w v  +
  Peaxi162Scf00071g02210.1  71 NYYVNFAKQIGFSVRRDRYFGSvEHHMGIYRRDYVCHRAGSPRPQKVADKERQRDRKSSRCNCNAKMCVAKEIidgITRWIVVYF 155
                               69****************9998767777********************9999******************998756789****** PP

                      FAR1  82 eleHnHela 90 
                               ++ HnHel 
  Peaxi162Scf00071g02210.1 156 DNVHNHELL 164
                               *******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1771164IPR004330FAR1 DNA binding domain
PfamPF105511.7E-11286342IPR018289MULE transposase domain
PROSITE profilePS509669.817486519IPR007527Zinc finger, SWIM-type
SMARTSM005759.1E-6494521IPR006564Zinc finger, PMZ-type
PfamPF044341.0E-6495518IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKVIKNILND STVGVSRSHC PSGDNECYIH EEIVGEITEM SSEELRPGKI DIGNIDLRKG  60
KIFNSDDEAY NYYVNFAKQI GFSVRRDRYF GSVEHHMGIY RRDYVCHRAG SPRPQKVADK  120
ERQRDRKSSR CNCNAKMCVA KEIIDGITRW IVVYFDNVHN HELLNVKEVK YLPAYRNIDY  180
IDQQRISLLA KAGCPISLIR RVLELEKSVD VGQLPFTEKD IRNFLQSESS TNIENDALEL  240
LKIRKSLKDK DADFQYDFTV DECQRLENII WAFGDSIRAY ELFGDVVVFD TIYRLNRYEM  300
PLGVWVGVNN HGNSIFFGCV LLRNEKASSF SWALKWDELI SEFGLESDRH IKLLYANRAT  360
WALPYLKGHF FAGMTTTGCS KSINAYLKRF LHARTSLKEF VEQVGTAVSI RNQAGEEATL  420
RQKYYNPQIK TFMPMEKHAS KVLSPFAFKL LQDEMILSAE YGLFSNNDGS YIVRHYSKTD  480
GGRYVYWNPL EEVVQCSCRE FEFSGILCRH SIRVLMAHNY FVLPEKYLLA R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596355.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S4CD640.0A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009596355.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-100FAR1-related sequence 10