PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00071g01052.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family AP2
Protein Properties Length: 267aa    MW: 29483.7 Da    PI: 10.8613
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00071g01052.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59.1e-10244248
                       AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48
                              g++GV  +k +g + A I + +     + k+++lg+f taeeA ka+  
  Peaxi162Scf00071g01052.1  2 GFPGVNKRK-DGTFGAVITHsF-----TkKSIWLGTFNTAEEASKAYLM 44
                              789***999.9*********77.....44*****************976 PP
2AP227.21e-0867104848
                       AP2   8 wdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaia 48 
                               ++ k+g++ A+I d +     + k+++lg+f+t eeA +a+  
  Peaxi162Scf00071g01052.1  67 QRLKSGKYSARIADpF-----ShKQVHLGTFDTIEEASEAYFS 104
                               55679*********66.....56*****************965 PP
3AP230.49.6e-101551941153
                       AP2  11 krgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                               k+gr+ A+Ird +     + k+++l +f+taeeA +a+   + ++
  Peaxi162Scf00071g01052.1 155 KSGRYSARIRDpF-----SrKQVHLATFDTAEEASEAYFSKKSEF 194
                               68*********55.....34******************8776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.455259IPR001471AP2/ERF domain
SMARTSM003800.0061273IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-9250IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-10342IPR001471AP2/ERF domain
PROSITE profilePS510329.7359126IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-963109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-767105IPR001471AP2/ERF domain
PROSITE profilePS510329.796147205IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-8149192IPR016177DNA-binding domain
SMARTSM003800.066150195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-8152187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MGFPGVNKRK DGTFGAVITH SFTKKSIWLG TFNTAEEASK AYLMKKQAFM ATHQSGKKPS  60
KGLPGTQRLK SGKYSARIAD PFSHKQVHLG TFDTIEEASE AYFSKISELK SNPKAFMATH  120
QSIKKPSKGL PGTQRLKSGS HPKANRNLIG TQKLKSGRYS ARIRDPFSRK QVHLATFDTA  180
EEASEAYFSK KSEFEKLVKV NTGKEPIIYV ESSKKASSLV ARVHGNKSSS DGCIYTVTSH  240
PKAKRSLLGI RRQKNGWNAE VVRDLCG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-10ERF family protein