PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00071g00158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 621aa MW: 72562.8 Da PI: 8.3417 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62 | 1.7e-19 | 92 | 185 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 +fY ++Ak+vGFsvr+++ s ++ i+k+++vC + g++ ++k +++++r ++++r++C+ak+ + ke +w v + Peaxi162Scf00071g00158.1 92 NFYVSFAKRVGFSVRRDRYLGSeEHPMGIYKKDYVCHRAGRSYSQKIVEKERQRDQKSSRCNCTAKMSIAKELidgIPRWIVVYF 176 6***************999888455667**************999999899999****************998845569****** PP FAR1 82 eleHnHela 90 ++ HnHel Peaxi162Scf00071g00158.1 177 DNVHNHELL 185 *******96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-16 | 92 | 185 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 621 aa Download sequence Send to blast |
MPLPLSLRSL KVAGREEEKK EHRIRLPQRV LMGSWQRRSN CACGDNGCYI NGDVAVGSTE 60 IFNQDLGQEN IDISNRDLHK GKVFSTHDEA YNFYVSFAKR VGFSVRRDRY LGSEEHPMGI 120 YKKDYVCHRA GRSYSQKIVE KERQRDQKSS RCNCTAKMSI AKELIDGIPR WIVVYFDNVH 180 NHELLNEKEV RFLPAYRNID IIDKKRITLL AKAGCSMSLI RRVLDLEKGV DVGKLSFTEK 240 DIRNFLQLES STNIEYDALE LLKVCKSLKG KDVDFHYDFT VDSCQLLEHI IWAFGDSTHA 300 YEIFGYVVVF YTTYRFNRYE MPLGFWIGVN NRGNSIFFGC SFIRLMKGKH LQTKLTDQDL 360 GLTEAITNEL PHTKHAFCIW HITSKYMQFK SKFHKINELG SIKEFEHQWD ELIAKFDLEL 420 DRNIKFQYAN FLTPFAFTLL QDEMILSVEY GLVSNGDDSY IVRHYSKTDG GRFVQCFPKS 480 IIFRVLSSHN YFMLPDKYFF PRWRQENSLV LKFSHIINYP NDANELHSFQ SIIRDLILES 540 MKSKSRLIYA KKELERLLQV VQCLLENELI IEEHGNITVS QIAEHESSDD DYQVENPQQS 600 QTKGRKRGKS FSLYKKSDAT R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016499085.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 11-like | ||||
TrEMBL | A0A1S4CD64 | 0.0 | A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like | ||||
STRING | XP_009596355.1 | 1e-165 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7183 | 7 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-104 | FAR1-related sequence 10 |