PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00068g02119.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 305aa    MW: 35112.2 Da    PI: 4.7755
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00068g02119.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.8e-1044121783
                               .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                        B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                 dv++s  +++ kk ae+h   + + +sk+l +ed++g+ +++++ +  + g y+l++GW+ + ++++L+  D +  +
  Peaxi162Scf00068g02119.1  44 ETDVGESFSVSILKKDAEDHlpRLAPGKSKMLEFEDTQGNNFKMEF-VHSNLGDYFLRTGWEWYRDEHKLEYDDLLSVY 121
                               5799******************999999******************.5667779********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-1039123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-742125No hitNo description
Gene3DG3DSA:2.40.330.101.8E-1142127IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-744121IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-5188258IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSKRKMKRES RKLISTSIST SGGNETQENA NNVQNDYGKL FLRETDVGES FSVSILKKDA  60
EDHLPRLAPG KSKMLEFEDT QGNNFKMEFV HSNLGDYFLR TGWEWYRDEH KLEYDDLLSV  120
YKKEKQNGID DQHYFYVIEC RKLTPDDLGL DVVEEFDHPT QHCRTDVELV VTQLLAALED  180
SESSVEKEPV LAKTLCYQDL YGNSNGLKLP KKEVEDNLND RPLARTILVY TDEEEYCIGF  240
GWKEYAAENN LLTFDTIFVN KIIVNRDVIR SELYKKQKQL GLRENSSPFA STTITAAGNN  300
NSTDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799396.11e-80PREDICTED: uncharacterized protein LOC104245480
TrEMBLA0A314L7502e-83A0A314L750_NICAT; Uncharacterized protein
STRINGXP_009799396.14e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1631025