PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00068g00247.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 240aa    MW: 27872.9 Da    PI: 4.5571
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00068g00247.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48e-11113198185
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvF 82 
                               f+k+lt  d ++++ l++pk+++ + +   + + tltl+d + g++We+++  + +s++  ++ ++ W+ + ++++L++gD++ +
  Peaxi162Scf00068g00247.1 113 FQKKLTGCDFTSTNGLRVPKQHFVQLKPRIRLPATLTLTDhQVGKEWEMEF--KENSRKeiFLRKEIWSPYRESQELRVGDTIKI 195
                               89*********************9997777899*******8889*******..44444444666789****************99 PP

                               EE- CS
                        B3  83 kld 85 
                               +++
  Peaxi162Scf00068g00247.1 196 ERI 198
                               965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-13104199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-11110198IPR015300DNA-binding pseudobarrel domain
CDDcd100175.87E-10113200No hitNo description
PROSITE profilePS508639.361113209IPR003340B3 DNA binding domain
PfamPF023623.5E-8113198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDAGNFNYDD NTTTGNESIN SGKKSCSNDE FISRLLTADD NITRDNELLN HLFQKDDSMA  60
VISEKQVDYP SRIEQETSSL VDTRVESKNE DFVNQTLQTT HSEMEDKKKE IVFQKKLTGC  120
DFTSTNGLRV PKQHFVQLKP RIRLPATLTL TDHQVGKEWE MEFKENSRKE IFLRKEIWSP  180
YRESQELRVG DTIKIERIMK LKGGVQKTEN IDWEESVDDD LVDIEYTITK IHAEEVSNED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1821933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-08related to ABI3/VP1 2