PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00067g01812.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HB-other
Protein Properties Length: 459aa    MW: 51438.4 Da    PI: 8.4759
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00067g01812.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.12.3e-0694150157
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                               +r+R  ++++ ++ +++ F+ +  ++++e +e+++  g+t +qV+ +F  +R++ +k
  Peaxi162Scf00067g01812.1  94 KRPRDLLNPKAIKYMQSIFAIKDAINKKETREISALFGVTATQVRDFFTAQRTRVRK 150
                               799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.42691151IPR001356Homeobox domain
SuperFamilySSF466891.45E-693154IPR009057Homeodomain-like
SMARTSM003897.2E-493155IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-594161IPR009057Homeodomain-like
CDDcd000862.24E-494150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEKNQLEVAL FNPSNTTSFM SSFESQKELF QSQIDQLHNI VLHQCNLTGV NPLSQEMVRL  60
FLSFIMLNCN FFNILLLMIV FGNAAGALSI KIGKRPRDLL NPKAIKYMQS IFAIKDAINK  120
KETREISALF GVTATQVRDF FTAQRTRVRK LLQLSREKAS TSNASSEGPC AIPLSSVPSL  180
QTEPVPLESV APTCTEEGPS CSTQDEILTG IEDSDKHFLD NIFTLMGKEE SFSGQVKLMD  240
WILEVQNPSV LYWFLTKGGV MILATWLSQA ALEEQTSVLH VILKVLCHLP LHKAFPVHMS  300
AILQSVNRLR FYRTPGVFLS HKTAPSDFCT APSIYFSWKR PDISNRARIL LAKWSKMFAK  360
SQAMKKRNGT KSASDMQDEL LLQQSIGEVM GSELWNAKVE DLDESHANLS GTSENLRKLD  420
SPQPVKLLTA SSDDSNKMIN KGALASSILR FFFPDKIYQ
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604664.10.0PREDICTED: homeobox protein LUMINIDEPENDENS
SwissprotQ387961e-132LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBLA0A1J6K9S10.0A0A1J6K9S1_NICAT; Homeobox protein luminidependens
STRINGXP_009604664.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52402123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-134HB-other family protein
Publications ? help Back to Top
  1. Chakrabortee S, et al.
    Luminidependens (LD) is an Arabidopsis protein with prion behavior.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70
    [PMID:27114519]