PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00067g01119.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family CO-like
Protein Properties Length: 383aa    MW: 43113.9 Da    PI: 5.7408
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00067g01119.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.7e-071659239
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                              ++r C+ ++e  + l+C+ ++  lC +C  e H+       Ht+
  Peaxi162Scf00067g01119.1 16 QQRLCDFCGEVTALLYCRADSAKLCFSCDREVHSTnqlftkHTR 59
                              7899******99*********************66778888875 PP
2zf-B_box28.53.1e-096297540
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40
                               C+ ++  ++++ C ++++ lC++C  e+H+ Ht+v
  Peaxi162Scf00067g01119.1 62 LCDICDTSPASILCVTDNSVLCQNCDWESHNIHTTV 97
                              6*****************************889986 PP
3CCT61.72.3e-21332373142
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvk 42 
                               Re a++RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k
  Peaxi162Scf00067g01119.1 332 RETAVSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAK 373
                               99***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-121562IPR000315B-box-type zinc finger
PROSITE profilePS501199.7981562IPR000315B-box-type zinc finger
PfamPF006431.1E-51659IPR000315B-box-type zinc finger
CDDcd000212.97E-71859No hitNo description
PROSITE profilePS501199.75558103IPR000315B-box-type zinc finger
PfamPF006432.0E-76297IPR000315B-box-type zinc finger
CDDcd000211.18E-56297No hitNo description
SMARTSM003360.07363103IPR000315B-box-type zinc finger
PfamPF062035.4E-16332374IPR010402CCT domain
PROSITE profilePS5101714.763332374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTELKEDQED HKKQPQQRLC DFCGEVTALL YCRADSAKLC FSCDREVHST NQLFTKHTRW  60
LLCDICDTSP ASILCVTDNS VLCQNCDWES HNIHTTVHER RPVEGFTGCP SVSELLSILG  120
FEDLSKKSLL YGGDSVGSDG GYDFSDWLVW DTPSVVSLDD LIAPNDSGHN FPAIGVPPLP  180
KNRNAACGKH KEEILRQLRE LSKSEPCSGN DQDETVPIKG FQSMEPGKNR QLGIKGSGFM  240
QNSDQNSEAH IVPSSEGSAF HWCSDAGEFA DQGFSSSIAD FFIETKCLHP DRDSDVGDTS  300
GGATEEQSHN PPTETFQMLP KVAYRELNSQ ERETAVSRYK EKKKTRRYEK HIRYESRKVR  360
AESRTRIKGR FAKMDYRDSP MHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016509923.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1S4D9640.0A0A1S4D964_TOBAC; zinc finger protein CONSTANS-LIKE 13-like
STRINGPGSC0003DMT4000295910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-87B-box type zinc finger protein with CCT domain