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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00066g00133.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 275aa MW: 31865 Da PI: 7.5236 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00066g00133.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.4 | 3.9e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifss+gkl+ey+s
Peaxi162Scf00066g00133.1 9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCS 59
79***********************************************96 PP
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2 | K-box | 60.4 | 7.3e-21 | 82 | 167 | 11 | 96 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
e + +l+ e+ak+++ + nLq ++ +++G+dL+ +++eL++Le+qLe++l+kiR++K el+ +q+e+l+k ek+l++en+++
Peaxi162Scf00066g00133.1 82 EDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMY 166
45566799*************************************************************************9887 PP
K-box 96 k 96
+
Peaxi162Scf00066g00133.1 167 Q 167
6 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 6.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.48E-45 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-31 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.032 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.2E-19 | 85 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008360 | Biological Process | regulation of cell shape |
GO:0019252 | Biological Process | starch biosynthetic process |
GO:0043068 | Biological Process | positive regulation of programmed cell death |
GO:0048316 | Biological Process | seed development |
GO:0048481 | Biological Process | plant ovule development |
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFSS KGKLFEYCSQ 60 PHSMSQIISR YLQTTGASLP VEDNRVQLYD EVAKMRRDTL NLQLSLQRYK GDDLSLAQYE 120 ELNELEKQLE HALNKIRARK LELMQQQMEN LKKTEKMLEK ENHDMYQWLM NNQMYKQESA 180 AMDHEDHHHH HEHQQAITEL NLLGEQPLLS HFTFFGDQEQ PSTSTVNHFA SISLTSPPAN 240 SISPYRLQPS HPNLQDSHTD HALTTRSSKC WVSGQ
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF335242 | 0.0 | AF335242.1 Petunia x hybrida MADS-box transcription factor FBP24 (FBP24) mRNA, complete cds. |