PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00063g02324.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 719aa    MW: 80722.8 Da    PI: 6.6707
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00063g02324.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-192777656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++++eq+++Le++F+++++p++++r++L++ +gL+ +q+k+WFqN+R++ k
  Peaxi162Scf00063g02324.1 27 RHSAEQIQQLEAFFKECPHPDENQRRQLSMDIGLDPKQIKFWFQNKRTQTK 77
                              5799*******************************************9987 PP
2START126.24.2e-402384583206
                               HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                     START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla 77 
                               a++a++e+v + +++ep+W+kss         d++ ++f++s         ++e +++sgvv+m++ +l +++ld   +W  +++
  Peaxi162Scf00063g02324.1 238 ALSAMDEVVELLQVNEPFWMKSScdgrYVIHHDTYEKIFPKSYPpyksstARIESSKDSGVVPMTAIELIQIFLDPI-KWMSMFP 321
                               7899*******************8776333456666666665558888889***********************999.******* PP

                               ....EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS
                     START  78 ....kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154
                                   ka t+ev+++g   g lqlm+ +   lsplv  Rdf f+R++rql   +w+  dvS +  ++ + + +   + ++pSg++i
  Peaxi162Scf00063g02324.1 322 tivtKARTIEVVDTGnfgGSLQLMYEKVHILSPLVGsRDFFFIRCCRQLDPTTWIMSDVSYEIFKEIQ-NGGPSQSWKFPSGCII 405
                               **********************************************************8888777776.677788889******* PP

                               EEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 155 epksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                               ++++ng+skvtw+ehv +++r+  h ++r lv  ++  gak+w  tlqr ce+
  Peaxi162Scf00063g02324.1 406 QELGNGKSKVTWLEHVQVDDRSQtHRIYRDLVCGRQTYGAKRWIVTLQRMCER 458
                               **********************99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.55E-17978IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-19973IPR009057Homeodomain-like
PROSITE profilePS5007115.5641979IPR001356Homeobox domain
SMARTSM003892.2E-151983IPR001356Homeobox domain
CDDcd000861.88E-152677No hitNo description
PfamPF000461.8E-162777IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084839.134227461IPR002913START domain
SuperFamilySSF559614.26E-28231459No hitNo description
CDDcd088755.69E-86231457No hitNo description
SMARTSM002341.9E-28236458IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-10237424IPR023393START-like domain
PfamPF018527.9E-34238458IPR002913START domain
SuperFamilySSF559614.12E-13515709No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MADSGDEHVG ESSSSRKRSK KQKLCHRHSA EQIQQLEAFF KECPHPDENQ RRQLSMDIGL  60
DPKQIKFWFQ NKRTQTKALN ERADNNTLRN ENERFHCENM AMREALKNII CPHCDGPPIG  120
EEERKRNFEK LKLANQRLRD EHERISNLIS SFVGRSFVTT SQLAPPQSTL GSLSSASTEE  180
SLVSQNIGGS PIIDHQENVG GTNSINTNPP ATIIPSQGMN HEIHYEIDRA KTKIFETALS  240
AMDEVVELLQ VNEPFWMKSS CDGRYVIHHD TYEKIFPKSY PPYKSSTARI ESSKDSGVVP  300
MTAIELIQIF LDPIKWMSMF PTIVTKARTI EVVDTGNFGG SLQLMYEKVH ILSPLVGSRD  360
FFFIRCCRQL DPTTWIMSDV SYEIFKEIQN GGPSQSWKFP SGCIIQELGN GKSKVTWLEH  420
VQVDDRSQTH RIYRDLVCGR QTYGAKRWIV TLQRMCERHN IAIGPKCPTR HDLEGVIDAP  480
DGKKNVTQIS LRMVKSFCEN LSMADKLDFP QLSDVNTSGV RISFRKNEDP SQPKGLIVSA  540
ATSLWLPLSF ETLFDFLKDE KTRPQWDVLT NGNHVNELAK IPAGTFPGNC ISIIQPFVEK  600
ESNMLMLQET SIDPMGAFLI YAPVDLPTVT SIISGDDTSK IPILPSGFII SPDGHLAADK  660
DNMGNTSTGS LLTVAFQILV CTNNINLISK QQNMESVATV HTLLSSTVQK IKAGLDCSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435660.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A1S3X6P60.0A0A1S3X6P6_TOBAC; homeobox-leucine zipper protein ROC8-like
STRINGXP_009771801.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10211732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11