PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00058g02913.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 508aa MW: 58306.1 Da PI: 8.8545

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00058g02913.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.5	2.5e-19	60	136	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 kfY +YA+ GFsv ks i+ ++fvCskeg+r++++++ ++++r etr gCk ++ ++k+++gkw++++l + H Peaxi162Scf00058g02913.1 60 KFYLDYAHCSGFSVHKS----------IIGQEFVCSKEGFRSKKSNE---SSQQRDETREGCKVMIYLSKKEEGKWVIARLISCH 131 6**********9765..........89999******99877...999**************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00058g02913.1 132 NHELA 136 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-16	60	136	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	1.6E-6	250	285	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.67	250	286	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
DKIANSNLPN QDIEGVGGSL EEFEGDIVTD IVPLNFQLSE EEPRAPYIGM EFQSLDTAFK 60 FYLDYAHCSG FSVHKSIIGQ EFVCSKEGFR SKKSNESSQQ RDETREGCKV MIYLSKKEEG 120 KWVIARLISC HNHELASQHS QKFLRSKRKK SEAQKNLIDL LDTSGVRPTQ YDKAVDARYD 180 KVREKDFKTK DSKAKLKTLY PMEDEAAKAC TRKMFKIFQE ELTMSQKFIE VKDGMRIYKV 240 HEFQQQKPEY IVRLNLELKN AVCSCHKFEF MEILCRHVLM VFIKKQIHSL PPCYLLDRWT 300 IFGTKEFFFE VSHEQHNLKP STVWFNNIMV HSLGISERAT RSGKHYKFAY QKLLQLSKEL 360 DELPYEFEDV NVCDGQVNES NVELNLGEQS QNVTLLDPPR TAAKGRPRSL RMKGGLESSR 420 TAKKNSSQKQ KGQTRSTKKG QGTSSSSKAE VESRSTETLL RAAPAMQFQS YSGSQGQNDN 480 GSGYPTSFKY SVTLLMQTMY RAQENNDN

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

DKIANSNLPN QDIEGVGGSL EEFEGDIVTD IVPLNFQLSE EEPRAPYIGM EFQSLDTAFK  60
FYLDYAHCSG FSVHKSIIGQ EFVCSKEGFR SKKSNESSQQ RDETREGCKV MIYLSKKEEG  120
KWVIARLISC HNHELASQHS QKFLRSKRKK SEAQKNLIDL LDTSGVRPTQ YDKAVDARYD  180
KVREKDFKTK DSKAKLKTLY PMEDEAAKAC TRKMFKIFQE ELTMSQKFIE VKDGMRIYKV  240
HEFQQQKPEY IVRLNLELKN AVCSCHKFEF MEILCRHVLM VFIKKQIHSL PPCYLLDRWT  300
IFGTKEFFFE VSHEQHNLKP STVWFNNIMV HSLGISERAT RSGKHYKFAY QKLLQLSKEL  360
DELPYEFEDV NVCDGQVNES NVELNLGEQS QNVTLLDPPR TAAKGRPRSL RMKGGLESSR  420
TAKKNSSQKQ KGQTRSTKKG QGTSSSSKAE VESRSTETLL RAAPAMQFQS YSGSQGQNDN  480
GSGYPTSFKY SVTLLMQTMY RAQENNDN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-148	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	1e-145	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7EY02	1e-143	A0A3Q7EY02_SOLLC; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-144	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-23	FAR1-related sequence 5