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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00058g00102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRAS | ||||||||
Protein Properties | Length: 437aa MW: 49489.9 Da PI: 4.7068 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 321.3 | 2e-98 | 61 | 436 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...f 84 +lL ecA+a++++d +++++lL+ l+el+sp+gd +q+la+yf++AL + ++++ ++yk+l++ ++++++ +++ l f Peaxi162Scf00058g00102.1 61 TLLRECATAITNKDSTKIHHLLWMLNELSSPYGDCNQKLASYFLQALFCKATDTGLRCYKTLTSVAEKSNSNFDSARK--LilkF 143 6899**********************************************************8888776554444433..3347* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerL 165 +evsP+ +f+h++ N aIlea++ge+++HiiD++ + ++QWp++l++La+R+ +++p+l++T+v+ +++ ++ ++e+ +r+ Peaxi162Scf00058g00102.1 144 QEVSPWTTFGHVASNGAILEALDGENKLHIIDISNTFCTQWPTFLESLATRNnDETPHLKLTVVSVTTANsvdKSVIMKEITQRM 228 ****************************************************77899********9887788788889******* PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.. 248 +kfA+ +gvpfefnv+ ++ l++l+ e+L+v+++Ea+aVn++ +l ++ +e+ r++++ l++sl+Pkvv++ve ead Peaxi162Scf00058g00102.1 229 EKFARLMGVPFEFNVISSSGLNNLTKESLNVQEEEAVAVNCIGALRKVG-----VEE-RESIITLIQSLNPKVVTIVEDEADFss 307 ***************9999*****************************8.....444.789*******************99954 PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac......egaerrerhetlekWrerleeaGFkpv 327 ++++F++ f e+l++y+ f++le+++p++s+er +E+e +r+i v+ac +g+ + er+e+ ++W+e+l++a F+p Peaxi162Scf00058g00102.1 308 TRNDFVKCFEECLRFYTLYFEMLEESFPPTSNERLILEKE-CSRSIIRVLACddligdQGDYSCERRERGSQWSEKLHKA-FTPF 390 5669************************************.6788877777733333368889***************98.**** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 pl+++a++++k+ll+++k +g+++ +es ++l+Wk++p+v++SaW+ Peaxi162Scf00058g00102.1 391 PLNDDAVDDVKALLKRYK-EGWSLVQESSGIYLTWKEEPVVWASAWK 436 ******************.9**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.182 | 33 | 417 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.0E-96 | 61 | 436 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEKSPFCSKP TNDVSLYTDK LIMIDMQNPN DQNSLSRSHE SSPESGDQPW VSDDANNWAS 60 TLLRECATAI TNKDSTKIHH LLWMLNELSS PYGDCNQKLA SYFLQALFCK ATDTGLRCYK 120 TLTSVAEKSN SNFDSARKLI LKFQEVSPWT TFGHVASNGA ILEALDGENK LHIIDISNTF 180 CTQWPTFLES LATRNNDETP HLKLTVVSVT TANSVDKSVI MKEITQRMEK FARLMGVPFE 240 FNVISSSGLN NLTKESLNVQ EEEAVAVNCI GALRKVGVEE RESIITLIQS LNPKVVTIVE 300 DEADFSSTRN DFVKCFEECL RFYTLYFEML EESFPPTSNE RLILEKECSR SIIRVLACDD 360 LIGDQGDYSC ERRERGSQWS EKLHKAFTPF PLNDDAVDDV KALLKRYKEG WSLVQESSGI 420 YLTWKEEPVV WASAWKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-136 | 58 | 437 | 86 | 474 | Protein SHORT-ROOT |
5b3h_B | 1e-137 | 58 | 437 | 32 | 420 | Protein SHORT-ROOT |
5b3h_E | 1e-137 | 58 | 437 | 32 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019236790.1 | 0.0 | PREDICTED: protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-136 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A1J6KMC5 | 0.0 | A0A1J6KMC5_NICAT; Protein short-root | ||||
STRING | XP_009785856.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-138 | GRAS family protein |