PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00049g00076.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 361aa MW: 40981.3 Da PI: 9.6671 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.4 | 1.8e-21 | 49 | 133 | 1 | 86 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +f neYA+++ Fs+rk++ +++k+ g +t+ ++ C keg+r+++k+k +++++r+etrtgC+a++ ++++++g++++tk+eleH Peaxi162Scf00049g00076.1 49 NFHNEYARRIRFSIRKEYVNTNKKLGYVTSWKLACFKEGFRDDDKRK-YQAKNSRKETRTGCQAHIIITRQSTGTYRITKVELEH 132 699*****************************************999.9************************************ PP FAR1 86 n 86 Peaxi162Scf00049g00076.1 133 M 133 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.5E-18 | 49 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MAVSCPPSSG EPAPRSSLCC VWPAPLDQGS LDHEPKLGLE FDSDDTAINF HNEYARRIRF 60 SIRKEYVNTN KKLGYVTSWK LACFKEGFRD DDKRKYQAKN SRKETRTGCQ AHIIITRQST 120 GTYRITKVEL EHMVHILSSH RKINTVQTYK IDLAKDVGLL SKATFDFMSL QAGGRENLGY 180 TKLDQKNYLR TKRQNALRQG KAVSKHGNAR EYIDKETDRP GVSSIPPEYI LKRGTKNAKA 240 KKIKEIDGQD IEINDPKLIS IACVNEFSSK LNQIMEKTQG KKVNYVNQDG STVNDRAQFD 300 NVNHLNQDWS AKEFFSHNSD LSASQNMVCA SVSQQAEFAL LMGSPTFTQM MTANYFESRR 360 V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-22 | FAR1-related sequence 5 |