PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00047g02450.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C3H

Protein Properties

Length: 406aa MW: 43504.4 Da PI: 6.5048

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00047g02450.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	33	44	14	25
--TTTTT-SS-S CS zf-CCCH 14 tCkyGdrCkFaH 25 C+yGdrCkF H Peaxi162Scf00047g02450.1 33 NCQYGDRCKFLH 44 5*********** PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MVLPVAEPGI EHSEEDLPQH QGCVLSMPPV YINCQYGDRC KFLHAAQQQP KQNPFGFGGQ 60 NTNFQNTNAQ QPRSNPFGNV QSNSQPGANP FGFGVQSNSQ PRGANNSGLT QNQYKPFENK 120 WTRAASTNSS PLRQSDNQPV APNHTCTDSD SCKRQIVEDF NNEKPLWILT CYGHRKSGPC 180 DITGDISYEE LRAAAYDDAK RGQSLMSIVE RERSLLNSKA AEFENLLRNP YVAPSSSAPN 240 AQSPFPGATP SAALSVQNSS PPSASSFSQL GALLNTGATP PPTNTFGQLS PLGNSVQTSS 300 SSGPNTFSFG NTSGSFGFGS QATSQPFQNA FTPSNISASS ERNPFSTSTT SHHFPNPSGS 360 QVSTQVHFPA SVAVSPVSIN LTSGAEKEEF SGDNSIWTKK EWKIGE

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MVLPVAEPGI EHSEEDLPQH QGCVLSMPPV YINCQYGDRC KFLHAAQQQP KQNPFGFGGQ  60
NTNFQNTNAQ QPRSNPFGNV QSNSQPGANP FGFGVQSNSQ PRGANNSGLT QNQYKPFENK  120
WTRAASTNSS PLRQSDNQPV APNHTCTDSD SCKRQIVEDF NNEKPLWILT CYGHRKSGPC  180
DITGDISYEE LRAAAYDDAK RGQSLMSIVE RERSLLNSKA AEFENLLRNP YVAPSSSAPN  240
AQSPFPGATP SAALSVQNSS PPSASSFSQL GALLNTGATP PPTNTFGQLS PLGNSVQTSS  300
SSGPNTFSFG NTSGSFGFGS QATSQPFQNA FTPSNISASS ERNPFSTSTT SHHFPNPSGS  360
QVSTQVHFPA SVAVSPVSIN LTSGAEKEEF SGDNSIWTKK EWKIGE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB898775	1e-139	AB898775.1 Nicotiana benthamiana NbCG1b mRNA for nuclear pore complex protein CG1b, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267519.1	1e-178	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBL	W6JJD1	1e-178	W6JJD1_NICBE; Nuclear pore complex protein CG1b
STRING	XP_009798981.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9439	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	3e-51	C3H family protein