PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00047g00152.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

C2H2

Protein Properties

Length: 358aa MW: 40584.2 Da PI: 8.7095

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00047g00152.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	3.9e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H Peaxi162Scf00047g00152.1 6 YICEVCHKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.4	0.00047	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Peaxi162Scf00047g00152.1 88 WKCDKCSKRYAVQSDWKAHSKIC 110 58*****************9876 PP
3	zf-C2H2	11.3	0.0011	118	136	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Peaxi162Scf00047g00152.1 118 DCGTIFSRKDSFVTHRAFC 136 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.44E-7	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.741	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.038	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	53	83	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-5	76	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.44E-7	83	108	No hit	No description
SMART	SM00355	140	88	108	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKSRPNN NNGSQGQVKK RVYVCPEPNC 60 VHHDPSRALG DLTGIKKHYC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYRCDCG 120 TIFSRKDSFV THRAFCDALT EENRNLSANA TGSRMLQNQS LSYPNYLNTN TTINSHENFD 180 NNPHGMMMMN PSYNLDSSAN NNSPPLATGS AFTSATALLQ KAAEMGARIS DNTILLKGFT 240 GYNNSPIVMN NNNINVNLSR TVGSGLYVGT LEVPFEKVMG MNSEDSNNNV TQVLMGGNEK 300 LTVDFLGVAT GDNNNQASYN ERKRRYNGDN MVELDYLKSH EEQEYRHHQS MHELQSEW

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKSRPNN NNGSQGQVKK RVYVCPEPNC  60
VHHDPSRALG DLTGIKKHYC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYRCDCG  120
TIFSRKDSFV THRAFCDALT EENRNLSANA TGSRMLQNQS LSYPNYLNTN TTINSHENFD  180
NNPHGMMMMN PSYNLDSSAN NNSPPLATGS AFTSATALLQ KAAEMGARIS DNTILLKGFT  240
GYNNSPIVMN NNNINVNLSR TVGSGLYVGT LEVPFEKVMG MNSEDSNNNV TQVLMGGNEK  300
LTVDFLGVAT GDNNNQASYN ERKRRYNGDN MVELDYLKSH EEQEYRHHQS MHELQSEW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-35	84	148	3	67	Zinc finger protein JACKDAW
5b3h_F	5e-35	84	148	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027120674.1	1e-128	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	O22759	3e-90	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A1R3HR05	1e-130	A0A1R3HR05_9ROSI; Uncharacterized protein
STRING	EOX99561	1e-129	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15900	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	2e-92	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]