PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00045g01638.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 510aa    MW: 58999.9 Da    PI: 9.7586
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00045g01638.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.7e-101513687
                              EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                        B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                              ++l+de  rsW+v l  r   +++ +t+GWk+F  a+gL++gD+  F+l++ 
  Peaxi162Scf00045g01638.1  1 MILKDEAQRSWSVWL-GRIDANHFGITRGWKQFRAAKGLQVGDTYKFELIKY 51
                              5799***********.6777778*************************9873 PP
2B342.98.5e-141372071899
                               --HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3  18 lpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                               +p  f+ ++ +g +   ++  +  + g++W vkl  ++++    l++GW++F+++++L+ gD++vF+++g++ef   v++f++
  Peaxi162Scf00045g01638.1 137 IPVGFL-NYlKGYE---QKHAVLRRAGKKWLVKL--NGHR----LEEGWEKFAEEHDLQLGDILVFRHEGDMEF--DVSIFDS 207
                               677777.4433332...24566788*********..7777....************************999999..9999986 PP
3B346.37.5e-152833521790
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                +p +fa+++g+ + ++  l+++d++ rsW+++l  +++++r+++ +GW +F  ang k+gD ++F+++ + ++
  Peaxi162Scf00045g01638.1 283 AIPTRFARANGLTN-KDCGLIIRDQRQRSWNLRL--SGYGSRVYMIGGWGKFSVANGFKVGDCIMFEVVTN-GE 352
                               59********7764.5557***************..******99999********************8764.33 PP
4B347.62.9e-15400482591
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l+++ l++pk+fa ++g+ + ++  +t++de+ rsW+++l  r  + +  +++GW e  + n LkegD ++F+++ + +
  Peaxi162Scf00045g01638.1 400 TVKPYCLSNDFLYIPKQFALANGLTN-KKCNVTIKDERQRSWNLRL--RSFGAGACISGGWHELRDTNCLKEGDQIMFEVVTN-G 480
                               678999****************8875.4459***************..88888899***********************8764.3 PP

                               E. CS
                        B3  90 fe 91 
                               ++
  Peaxi162Scf00045g01638.1 481 EK 482
                               33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.29E-9161No hitNo description
PfamPF023622.0E-8151IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-10160IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.28162IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-10160IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-2092210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-1397206No hitNo description
SMARTSM010191.5E-10126208IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-17131210IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-10137207IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182137208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-16249354IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-11273362IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-16282360IPR015300DNA-binding pseudobarrel domain
PfamPF023624.5E-12283354IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547284363IPR003340B3 DNA binding domain
CDDcd100173.14E-13284346No hitNo description
SuperFamilySSF1019361.26E-17392488IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-17395486IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.984396490IPR003340B3 DNA binding domain
SMARTSM010191.0E-15397490IPR003340B3 DNA binding domain
PfamPF023627.8E-14399483IPR003340B3 DNA binding domain
CDDcd100174.94E-11402475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MILKDEAQRS WSVWLGRIDA NHFGITRGWK QFRAAKGLQV GDTYKFELIK YGKVPIAFFR  60
RIPLITFKFH LSILISITKL IYCIFFYNAM KVPPKKPHFF KPIQPGFKLG LVSNLFFLHS  120
DLAIGYSKFM LYYMQKIPVG FLNYLKGYEQ KHAVLRRAGK KWLVKLNGHR LEEGWEKFAE  180
EHDLQLGDIL VFRHEGDMEF DVSIFDSSQC DRENSGYLQE EGGEEGGERE EEPKKFEYKE  240
AATHNSFGES HFVCTVRRYF LSKGYLQKYE HVICANRYKP FQAIPTRFAR ANGLTNKDCG  300
LIIRDQRQRS WNLRLSGYGS RVYMIGGWGK FSVANGFKVG DCIMFEVVTN GETPFLDMGF  360
RSVNRVTDRQ NSNIKSSRNA FPHAEAATHI PFGYSHFVCT VKPYCLSNDF LYIPKQFALA  420
NGLTNKKCNV TIKDERQRSW NLRLRSFGAG ACISGGWHEL RDTNCLKEGD QIMFEVVTNG  480
EKPIWKFHGK FSHVSSLLHI FSIIIFTHTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755201e-43HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261611.11e-168PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A314LA481e-166A0A314LA48_NICAT; B3 domain-containing protein rem10
STRINGXP_009612433.11e-150(Nicotiana tomentosiformis)
STRINGXP_009612446.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.13e-39B3 family protein