PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00045g01537.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 540aa    MW: 61165 Da    PI: 8.5162
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00045g01537.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14741461895
                               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                               +pk fa+e+g++ ++  t++++d + r W++ l  + + gr+++++ W++F+ an Lkeg+ v+F+    +++++++k
  Peaxi162Scf00045g01537.1  74 VPKAFARENGLNDRK-CTIMIRD-EERPWKFSL--SSSAGRTFIGGDWRKFCAANFLKEGECVMFEIFA-NGEKPTLK 146
                               7********999766.5999998.78*******..*******************************655.45555555 PP
2B338.61.9e-122092791798
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                +p  f+++ +g+++e     +  ++g++W+vkl  ++ +    +++GW++F+++++L+ g ++ F+++g++ef   v++++
  Peaxi162Scf00045g01537.1 209 KIPVGFLKHLKGQEHE---HAILRRNGKKWQVKL--NGPR----FEEGWEKFAEEHDLQLGSVLEFRHEGDMEF--EVTILD 279
                               699****777888655...566778*********..6665....9************************99999..777776 PP
3B340.74.3e-133203941796
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ++p +f++e+g+ +++  +++++d + rsW + l  + +++ + +++GW++F+ an LkegD ++F+ + + ++ +++k+
  Peaxi162Scf00045g01537.1 320 RVPTPFVRENGLCNRK-CKIIIRD-EQRSWIFSL--NSCGKNTKIGGGWRNFCLANCLKEGDRLMFEIVAN-GEIPMLKF 394
                               68********888655.5899899.779******..99999999***********************8764.44456555 PP
4B348.71.4e-15428514596
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++++++l++  l++p++fa+ h++ ++e   +t++d + rsW++ l    +sg++++++ W +F+ an L+ gD v+F+++ + +
  Peaxi162Scf00045g01537.1 428 TMKPYYLANYFLCVPRPFARLHSLRNKE-CAITIND-NQRSWTFSL--HSSSGHTYIGGKWHDFCAANCLRGGDHVMFEMVAN-G 507
                               57899999999***********655433.3577656.99*******..*******************************9875.4 PP

                               E..EEEE CS
                        B3  90 felvvkv 96 
                               +++++k+
  Peaxi162Scf00045g01537.1 508 EKPTLKF 514
                               4456555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.377161IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-6457IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-6659IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-1063151IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-1372147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1372148IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1273146IPR003340B3 DNA binding domain
CDDcd100172.33E-1274147No hitNo description
PROSITE profilePS5086310.58874150IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-19172283IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-7202281IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-15209283IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-9209278IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152210281IPR003340B3 DNA binding domain
CDDcd100179.05E-13210279No hitNo description
SMARTSM010191.2E-8309398IPR003340B3 DNA binding domain
CDDcd100173.07E-12309382No hitNo description
SuperFamilySSF1019364.9E-13311395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-13319395IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-11320396IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941321397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-17422514IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-17423514IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-12423515No hitNo description
PROSITE profilePS5086310.659424517IPR003340B3 DNA binding domain
SMARTSM010191.6E-11425518IPR003340B3 DNA binding domain
PfamPF023625.4E-13428514IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MITIRDEQMS WAFSLYPCRE STNIGGGWHN FFLENCLKQG DCAAFEIVAT GKKPILNIQM  60
NCLFASGYKL FQHVPKAFAR ENGLNDRKCT IMIRDEERPW KFSLSSSAGR TFIGGDWRKF  120
CAANFLKEGE CVMFEIFANG EKPTLKFNGK TGQRTQTSNM TSPKAQVPAS TSANANPHYI  180
STIKPYSISQ DCKYAGKDAP GIRKAINKKI PVGFLKHLKG QEHEHAILRR NGKKWQVKLN  240
GPRFEEGWEK FAEEHDLQLG SVLEFRHEGD MEFEVTILDS SQCDKEYVDH LQEEEEETAK  300
KSDLEGKPKI MSSDKAFPNR VPTPFVRENG LCNRKCKIII RDEQRSWIFS LNSCGKNTKI  360
GGGWRNFCLA NCLKEGDRLM FEIVANGEIP MLKFHERPKP NIKSSDAAFP NVEAAIDMPL  420
LQPHFICTMK PYYLANYFLC VPRPFARLHS LRNKECAITI NDNQRSWTFS LHSSSGHTYI  480
GGKWHDFCAA NCLRGGDHVM FEMVANGEKP TLKFHGKILC PALSKYAGKD APGITEALDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254330.11e-139PREDICTED: B3 domain-containing protein REM10-like isoform X3
TrEMBLA0A1U8H1691e-120A0A1U8H169_CAPAN; B3 domain-containing protein REM10-like
STRINGXP_009597618.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-38B3 family protein