PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00045g01527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 258aa MW: 30010.6 Da PI: 4.9442 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.7e-14 | 2 | 71 | 18 | 98 |
--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +pk f+ ++ g+++ + + + g++W+vk+ +++ +l++GW +F+++++L++ D +vF+++g++ef v++f+ Peaxi162Scf00045g01527.1 2 IPKAFF-KYldGHIQ----EHAILRSAGKEWRVKV--NGQ----LLEDGWGKFAEEHDLQVEDCLVFRHEGNMEF--EVTIFN 71 899999.56544332....3455567*********..444....7*************************99999..888886 PP | |||||||
2 | B3 | 50.1 | 4.8e-16 | 132 | 210 | 10 | 99 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k+g + +p f+ ++ +g+++ + + ++g++W+vkl ++++ +++GW eF+++++L++g ++vF+++g++ef Peaxi162Scf00045g01527.1 132 GFKNG-IKIPIGFL-KYlEGQEKH--EHAILRRNGKEWQVKL--NGHR----FEEGWAEFAEEHDLQVGHMLVFRHEGDMEF--E 204 45555.99******.555766433..5777789*********..7777....9***********************999999..9 PP EEEE-S CS B3 94 vkvfrk 99 v++f++ Peaxi162Scf00045g01527.1 205 VSIFDS 210 999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.169 | 1 | 73 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.35E-15 | 2 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-17 | 2 | 73 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.97E-13 | 2 | 71 | No hit | No description |
Pfam | PF02362 | 6.4E-11 | 2 | 72 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-4 | 2 | 73 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-23 | 118 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-21 | 119 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.52 | 122 | 211 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.21E-17 | 123 | 209 | No hit | No description |
SMART | SM01019 | 6.5E-16 | 125 | 211 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-13 | 134 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
KIPKAFFKYL DGHIQEHAIL RSAGKEWRVK VNGQLLEDGW GKFAEEHDLQ VEDCLVFRHE 60 GNMEFEVTIF NSNHLEREYV KPLEGVNEEN EESDHAGKNF TSQGLNSNMS SSLVTMKVPP 120 KNPHFFKPIV PGFKNGIKIP IGFLKYLEGQ EKHEHAILRR NGKEWQVKLN GHRFEEGWAE 180 FAEEHDLQVG HMLVFRHEGD MEFEVSIFDS SQCNTEYVQH QQEEEEETAK ISDMEGESSY 240 GPFDIKFLIF NFLIYGYV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168739.1 | 1e-66 | PREDICTED: B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1S3ZJZ8 | 2e-51 | A0A1S3ZJZ8_TOBAC; B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A1U7YRV2 | 2e-51 | A0A1U7YRV2_NICSY; B3 domain-containing protein REM14-like | ||||
TrEMBL | A0A2G2VC79 | 9e-52 | A0A2G2VC79_CAPBA; Uncharacterized protein | ||||
STRING | XP_009801949.1 | 4e-52 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 3e-29 | B3 family protein |