![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00045g01116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 685aa MW: 77781.4 Da PI: 6.2401 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 162.5 | 2.8e-50 | 47 | 193 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagss 85 +sgrk+++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+r+AGw v++DGttyr++ p+ ++++ +g+ Peaxi162Scf00045g01116.1 47 SSGRKEREKEKERTKLRERHRRAITSRMLSGLRQYGNFPLPVRADMNDVLAALARQAGWNVDPDGTTYRQSPPPPnNNNNNIGTY 131 79*********************************************************************999989999***** PP DUF822 86 asaspesslq.sslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvlsl 145 + +s+es+++ ssl++++++ v+ ++++p+ ++ +sp+s+dsi ++++ ++ +++s++s Peaxi162Scf00045g01116.1 132 QVMSVESPVSgSSLRNCSTRVSVDCQQSVPRINECLSPASFDSIVVTESdVKVDKFTSTTSP 193 ********************************************999876444444444433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.6E-51 | 47 | 189 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 3.8E-24 | 221 | 300 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 3.16E-135 | 222 | 298 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 2.3E-9 | 245 | 301 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-24 | 258 | 272 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-24 | 279 | 297 | IPR001554 | Glycoside hydrolase, family 14 |
Gene3D | G3DSA:3.20.20.80 | 9.8E-138 | 324 | 678 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 7.6E-64 | 326 | 641 | IPR001554 | Glycoside hydrolase, family 14 |
SuperFamily | SSF51445 | 3.16E-135 | 327 | 676 | IPR017853 | Glycoside hydrolase superfamily |
PRINTS | PR00750 | 2.5E-24 | 546 | 557 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-24 | 564 | 587 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.5E-24 | 600 | 622 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 685 aa Download sequence Send to blast |
MNHHQQQQDP DPQFPNRNED PNPNPQPQPR RPRGFAATNT AGGTNKSSGR KEREKEKERT 60 KLRERHRRAI TSRMLSGLRQ YGNFPLPVRA DMNDVLAALA RQAGWNVDPD GTTYRQSPPP 120 PNNNNNNIGT YQVMSVESPV SGSSLRNCST RVSVDCQQSV PRINECLSPA SFDSIVVTES 180 DVKVDKFTST TSPMNSTECL EAGQLMQELH SGQHGSGFSG TEYVPVFVLL SSGLINNFCQ 240 LMDPDGVKQE LQQLKSLNID GVVVNCWWGI VESWVPQKYE WSGYRELFNI IRDFKMKLQV 300 LKHSLYLWID GLKMTQCFMG FCFLSTKVVM AFHENGGSDT SGMFISLPQW VLEIGKDNQD 360 IFFTDRQGRR NTECLSWGID KERVLRGRTA IEVYFDVMRS FRTEFDDLFT EGLISAVEIG 420 LGASGELKYP SFSERMGWRY PGIGEFQCYD KYSLQNLRKA ATSRGHSFWA KGPDNAGYYN 480 SKPHETGFFC ERGDYDSYYG RFFLHWYRQV LIDHADNVLS LASLAFEGIQ IVVKIPAIYW 540 WYRTSSHAAE LTAGYYNPTN QDGYSPVFEV LKKHSVTIKY ICSGVQVPET DEALADPEGL 600 SWQILNSAWD TALPIAGQNA FPCYDREGLM KLVETAKPTN DPDHHHFSFF VFQQPAPLVQ 660 SAICFSELDY FIKHMHGEIM NNVES |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1v3i_A | 1e-117 | 223 | 678 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 8e-98 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004244442.1 | 0.0 | beta-amylase 8 isoform X2 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A1S3ZH49 | 0.0 | A0A1S3ZH49_TOBAC; Beta-amylase | ||||
STRING | Solyc08g005780.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1607 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|