PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00045g00237.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ARF
Protein Properties Length: 846aa    MW: 93806.3 Da    PI: 6.0595
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00045g00237.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.8e-22128222190
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD
  Peaxi162Scf00045g00237.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGD 210
                               99*****************************8544444..48******************************************* PP

                               EEEEEE-SSSEE CS
                        B3  79 fvvFkldgrsef 90 
                               +v+F  ++ s+f
  Peaxi162Scf00045g00237.1 211 SVIFIWSSPSDF 222
                               ****96655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-42113223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-37121222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-21127224No hitNo description
PfamPF023622.3E-20128222IPR003340B3 DNA binding domain
SMARTSM010192.8E-21128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73128230IPR003340B3 DNA binding domain
PfamPF065079.4E-24217282IPR010525Auxin response factor
PfamPF023092.8E-7704797IPR033389AUX/IAA domain
SuperFamilySSF542775.76E-7706787No hitNo description
PROSITE profilePS5174523.828712796IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MRLSSAGLNQ QSPEEENKCL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
AEAHFPSYPS LPPQLICQLH NVTMHADVET DDVYAQMTLQ PLSPEEQKES SFLPLDLGTP  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWSSPS DFVIPLAKYV KAVYHTRVSV  240
GMRFRMLFET EESSVRRYMG TVTGIGDLDP AHWPNSHWRS VKVGWDESTA GERQPRVSLW  300
EIEPLTSFPM YPSPFPLGLK RSWPPGFPAL NGMKDADMVM NPMMWLREVG HPGTQSINFQ  360
GFGVTPWMQP RIDVPIVGMQ MDAYQAMATA GLQDMRALDH GKQALNPLLQ LQQANGVSSS  420
TAGLLYPQLF QQSQSQTAFL PSMAEGQFQV QPSQPHSFQQ QMLHQNSFNT IHQQQHQSPQ  480
ERQPPVQQQQ AIGQQVANVS SVMNQLGTSS QSTKTSLQSF CSMQQERFTD THMNLSTNPI  540
TNPLHSLSGA VARDEPTHLV SVTRSSSLLS PTGWPPKRVA IDPVLSPVSS QCTSPQVDRL  600
GTPTKSISQN AFSLPPFPGR EYPVDQEGNN DPHNHLLFGV NIDSPSLMQN GIPNLRGVGS  660
DCESTNVPFA SSNYLSNTGT DFQNAVMGTS GCIDESGFMQ NSENVGQQSP HNTFVKVYKS  720
GSFGRSLDIT KFSSYHELRS ELAQMFGLEG LLEDPLRSGW QLVFVDREND VLLLGDDPWP  780
EFVNSVWCIK ILSPQDVQQM GKQGLELLNS VSVSRTSNNY SCDDFANRSE TRNMTSGIMS  840
VGTLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1132030851393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627654.10.0PREDICTED: auxin response factor 6-like isoform X3
RefseqXP_016449913.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3YD380.0A0A1S3YD38_TOBAC; Auxin response factor
STRINGXP_009797608.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]