PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00045g00221.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

G2-like

Protein Properties

Length: 393aa MW: 44574.4 Da PI: 7.9916

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00045g00221.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	207	260	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Peaxi162Scf00045g00221.1 207 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 260 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	204	260	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	205	260	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-24	207	260	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-7	208	259	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNNK QSWKGSASAT VEEEHMDLGF WKRALESRNT NNNTTTSTTS 60 CFELSLSNNN VPRPSSTTHQ EPNSKFIHSS LHQNHFINNY QQQQQQLLQN QVLSPHHELG 120 FLRPIRGVPL YNQNPPAPTL SPFPFSHQQT FDTTTSLPSF NSNNNNMMMS SSNSHFQSHH 180 HHHHHQGGVM RSRFMSRFPV KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL 240 MDVKDLTLAH VKSHLQMYRT VKTTDKSAAG AASSGQSEVY DNGSSGDNSE ELVLEIQNSR 300 KSELSVQQGR ENMHHQEKDY RGLWSNSSSR ESWQLHGKLR EDYPENIPSL EKELEAKCLS 360 YEGISTEVSS SSITEASPKK KPNLEFTLGR TLD

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNNK QSWKGSASAT VEEEHMDLGF WKRALESRNT NNNTTTSTTS  60
CFELSLSNNN VPRPSSTTHQ EPNSKFIHSS LHQNHFINNY QQQQQQLLQN QVLSPHHELG  120
FLRPIRGVPL YNQNPPAPTL SPFPFSHQQT FDTTTSLPSF NSNNNNMMMS SSNSHFQSHH  180
HHHHHQGGVM RSRFMSRFPV KRSMRAPRMR WTSTLHARFV HAVELLGGHE RATPKSVLEL  240
MDVKDLTLAH VKSHLQMYRT VKTTDKSAAG AASSGQSEVY DNGSSGDNSE ELVLEIQNSR  300
KSELSVQQGR ENMHHQEKDY RGLWSNSSSR ESWQLHGKLR EDYPENIPSL EKELEAKCLS  360
YEGISTEVSS SSITEASPKK KPNLEFTLGR TLD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-16	208	262	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010939	1e-39	AP010939.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0175O15, complete sequence.
GenBank	HG975447	1e-39	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	1e-39	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006361268.1	1e-168	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	3e-90	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M1BKY1	1e-167	M1BKY1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400047532	1e-168	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	2e-47	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]