PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00040g00025.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

NAC

Protein Properties

Length: 250aa MW: 28732.7 Da PI: 7.0329

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00040g00025.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146	2e-45	4	131	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrF Pt+eel+++yL++k+egk+ el++vi+ + iy+++Pw+Lp + + +++++w+fF++r++++a+g r+ r+t sgyWka Peaxi162Scf00040g00025.1 4 SPGFRFYPTEEELITFYLHNKLEGKRPELDRVIPVITIYDLDPWHLPrELCMGDTEQWFFFVPRQEREARGGRPCRTTGSGYWKA 88 69*************************999***********444445667************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+ Peaxi162Scf00040g00025.1 89 TGSPSYVYSAESKVIGVKKSMVFYKGKAPTGRKTKWKMNEYRA 131 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-49	2	158	IPR003441	NAC domain
PROSITE profile	PS51005	47.972	3	160	IPR003441	NAC domain
Pfam	PF02365	1.3E-23	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEISPGFRFY PTEEELITFY LHNKLEGKRP ELDRVIPVIT IYDLDPWHLP RELCMGDTEQ 60 WFFFVPRQER EARGGRPCRT TGSGYWKATG SPSYVYSAES KVIGVKKSMV FYKGKAPTGR 120 KTKWKMNEYR AIEEENSTSS IPKCILQLRH EMSLCRVYVI SGSLRSFDRR PVAAVTREMP 180 APEHRNQEVS RDDSSAVIVK NVSKMETLSS PESSAIEEEY VYNLHDQVPI APSMDSNMAK 240 SDLEPFSVFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-38	1	158	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-38	1	158	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-38	1	158	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-38	1	158	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-38	1	158	18	166	NAC domain-containing protein 19
3swm_B	2e-38	1	158	18	166	NAC domain-containing protein 19
3swm_C	2e-38	1	158	18	166	NAC domain-containing protein 19
3swm_D	2e-38	1	158	18	166	NAC domain-containing protein 19
3swp_A	2e-38	1	158	18	166	NAC domain-containing protein 19
3swp_B	2e-38	1	158	18	166	NAC domain-containing protein 19
3swp_C	2e-38	1	158	18	166	NAC domain-containing protein 19
3swp_D	2e-38	1	158	18	166	NAC domain-containing protein 19
4dul_A	3e-38	1	158	15	163	NAC domain-containing protein 19
4dul_B	3e-38	1	158	15	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB021178	1e-148	AB021178.1 Nicotiana tabacum TERN mRNA for NAC-domain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597635.1	1e-132	PREDICTED: NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	1e-79	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3XG35	1e-130	A0A1S3XG35_TOBAC; NAC domain-containing protein 90-like
STRING	XP_009597635.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-82	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]