PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g01650.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 474aa    MW: 52514.9 Da    PI: 9.3086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g01650.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0591113123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++C+k F r  nL+ H r H
  Peaxi162Scf00038g01650.1  91 FVCEICNKGFQRDQNLQLHRRGH 113
                               89*******************88 PP
2zf-C2H213.50.00022167189123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               +kC++C+k++  +s+ k H +t+
  Peaxi162Scf00038g01650.1 167 WKCEKCSKRYAVQSDWKAHSKTC 189
                               58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-790113No hitNo description
SMARTSM003550.01791113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94991113IPR007087Zinc finger, C2H2
PfamPF121717.5E-591113IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035587132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-5155188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-7162187No hitNo description
SMARTSM00355130167187IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MMKSLMNQQS QVVEENMSNL TSASGEAASV SSCNRNDTTG GLYPPQYFAP PNQSTQPQQQ  60
IKKKRNQPGN PDPGAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEIRKK VYVCPEPSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS  180
DWKAHSKTCG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESARAIPGNP IHPSQTGTST  240
SHMNIQFQQS HFNNHDIPAT FSMKKEPQTH GFNLRPEIPP WLITCQPMVT SGLSPGPGPP  300
PPQTQPIDLS SSIFHSSRFD QDHYTPQSHH QDINPNPNLG GHGLVASPHI SATALLQKAA  360
QMGATMSNKA SSVSSGPSQP MLIMRPHHQV HVSTTTDSVT NTSDVGLNLS SRSNFEDTFG  420
GIGMLNSKKD NDDMTKDFLG LRPLSSSDIF NIAGLVNTSN EHNHQSQNHK TWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35163224364Zinc finger protein JACKDAW
5b3h_F4e-35163224364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117129KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479409.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_016479410.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-131IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1S4ARV00.0A0A1S4ARV0_TOBAC; protein indeterminate-domain 7-like
STRINGXP_009626387.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-130indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]