PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00038g01649.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 479aa MW: 54613.9 Da PI: 7.9869

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00038g01649.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.6	8.4e-13	5	45	51	91
FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 + ++r++ ++gCka+++vk++ +gkw+++++++eHnHel p Peaxi162Scf00038g01649.1 5 AINPRPSPKIGCKASMHVKRKPEGKWYIHSFVKEHNHELLP 45 56789999******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-10	5	45	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.571	242	278	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-8	251	276	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	253	280	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
QSDDAINPRP SPKIGCKASM HVKRKPEGKW YIHSFVKEHN HELLPAQVHF FRSHRNADPL 60 KNDSKVRRKK MLAVVSKQYG TYQFSEQFEQ RWWKLIEKFN LREDEWVQLL YEDRKLWVPS 120 FMRDVSFAGL STASRSESMN SFFDKCIHSE TSLRDFIGQH KLIFIDWYEE EAKANFDAWH 180 EMPELKSPSP FEKQMLLIYT NEIFKKFQVE VLGAAACHLK KESEDGASIT YAVKDFDANQ 240 DFMVEWDASR SDIYCSCHSF EYKGYLCRHA IVVLQMSGVF NIPSKYILQR WTNAATSRHS 300 ISGSLDNVQA KIRRYNDLCR RAIILGEEGS LTQESYNIAV GAIKDALKQC ATVNVTFEAN 360 LRSGSSATVA IQGVDEVSQG NALASRELVP CSKAAQTSKG SKRANPGHER ESNIANKKGK 420 VPLEPEIVNG AQGVFHQMDM PGTLDYPSLY PRFLSTLLRG GDVNKRSVEL LGEMLEEQN

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

QSDDAINPRP SPKIGCKASM HVKRKPEGKW YIHSFVKEHN HELLPAQVHF FRSHRNADPL  60
KNDSKVRRKK MLAVVSKQYG TYQFSEQFEQ RWWKLIEKFN LREDEWVQLL YEDRKLWVPS  120
FMRDVSFAGL STASRSESMN SFFDKCIHSE TSLRDFIGQH KLIFIDWYEE EAKANFDAWH  180
EMPELKSPSP FEKQMLLIYT NEIFKKFQVE VLGAAACHLK KESEDGASIT YAVKDFDANQ  240
DFMVEWDASR SDIYCSCHSF EYKGYLCRHA IVVLQMSGVF NIPSKYILQR WTNAATSRHS  300
ISGSLDNVQA KIRRYNDLCR RAIILGEEGS LTQESYNIAV GAIKDALKQC ATVNVTFEAN  360
LRSGSSATVA IQGVDEVSQG NALASRELVP CSKAAQTSKG SKRANPGHER ESNIANKKGK  420
VPLEPEIVNG AQGVFHQMDM PGTLDYPSLY PRFLSTLLRG GDVNKRSVEL LGEMLEEQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016491113.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X3
Swissprot	Q6NQJ7	1e-131	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1S4BQN8	0.0	A0A1S4BQN8_TOBAC; protein FAR1-RELATED SEQUENCE 4-like isoform X3
STRING	XP_009600660.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-134	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]