PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00036g00419.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 469aa MW: 54275.1 Da PI: 9.8868

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00036g00419.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.2	2.5e-22	57	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks+++++++ + fvCskeg r ++ k ++r++ +tr g k l v+k+++g+w + +l+++H Peaxi162Scf00036g00419.1 57 NFYLDYAHRNGFSVRRGRVTKSRKDKSVIGQVFVCSKEGLRPKKYFK---NNRPQDVTREGRKVLLYVSKKEEGTWAIRRLVSDH 138 6**************************************998777...999**************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00036g00419.1 139 NHELA 143 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-20	57	143	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.324	261	297	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-5	269	296	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-4	272	299	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MEVSNSDYQH LEGGEVTLEE IESDTDETTQ SVPDLGVENR KEPYIGMEFS SLDDAFNFYL 60 DYAHRNGFSV RRGRVTKSRK DKSVIGQVFV CSKEGLRPKK YFKNNRPQDV TREGRKVLLY 120 VSKKEEGTWA IRRLVSDHNH ELATPRSQKF LRSKRKKSEA QKNLIDLLDD SGVRPGKIAS 180 AIDARYDKIR EKEFKTKSSF PIFKTLYPME AEAAKVYTRK IFNLFQDELV DSQKFVSEKI 240 EVKDGMHIYK VHEFERPKPA YIVSLDFALR TVVCSCHKFE FMGILCSHVL MIFIKKKIHS 300 LPNCYFLDRW TRNATKEKVD DYPNETKKLR PALWFSNIMM HSIGLSERAT RFEKHYQLAQ 360 LRLLQLCEEL DELPYEFEKD CVKGAQVSES NLDNKITLLD PPRAATKGRP RSLRMKSPLE 420 STRKTQKGSS QRQKGQRKNT KLKSKGISLN SDVDATQKST LTLSEAHAM

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MEVSNSDYQH LEGGEVTLEE IESDTDETTQ SVPDLGVENR KEPYIGMEFS SLDDAFNFYL  60
DYAHRNGFSV RRGRVTKSRK DKSVIGQVFV CSKEGLRPKK YFKNNRPQDV TREGRKVLLY  120
VSKKEEGTWA IRRLVSDHNH ELATPRSQKF LRSKRKKSEA QKNLIDLLDD SGVRPGKIAS  180
AIDARYDKIR EKEFKTKSSF PIFKTLYPME AEAAKVYTRK IFNLFQDELV DSQKFVSEKI  240
EVKDGMHIYK VHEFERPKPA YIVSLDFALR TVVCSCHKFE FMGILCSHVL MIFIKKKIHS  300
LPNCYFLDRW TRNATKEKVD DYPNETKKLR PALWFSNIMM HSIGLSERAT RFEKHYQLAQ  360
LRLLQLCEEL DELPYEFEKD CVKGAQVSES NLDNKITLLD PPRAATKGRP RSLRMKSPLE  420
STRKTQKGSS QRQKGQRKNT KLKSKGISLN SDVDATQKST LTLSEAHAM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	1e-109	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	1e-106	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	1e-162	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	1e-105	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-26	FAR1-related sequence 3