PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00036g00419.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 469aa MW: 54275.1 Da PI: 9.8868 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.2 | 2.5e-22 | 57 | 143 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA++ GFsvr+ + +ks+++++++ + fvCskeg r ++ k ++r++ +tr g k l v+k+++g+w + +l+++H Peaxi162Scf00036g00419.1 57 NFYLDYAHRNGFSVRRGRVTKSRKDKSVIGQVFVCSKEGLRPKKYFK---NNRPQDVTREGRKVLLYVSKKEEGTWAIRRLVSDH 138 6****************************************998777...999******************************** PP FAR1 86 nHela 90 nHela Peaxi162Scf00036g00419.1 139 NHELA 143 ***97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-20 | 57 | 143 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.324 | 261 | 297 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-5 | 269 | 296 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.0E-4 | 272 | 299 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MEVSNSDYQH LEGGEVTLEE IESDTDETTQ SVPDLGVENR KEPYIGMEFS SLDDAFNFYL 60 DYAHRNGFSV RRGRVTKSRK DKSVIGQVFV CSKEGLRPKK YFKNNRPQDV TREGRKVLLY 120 VSKKEEGTWA IRRLVSDHNH ELATPRSQKF LRSKRKKSEA QKNLIDLLDD SGVRPGKIAS 180 AIDARYDKIR EKEFKTKSSF PIFKTLYPME AEAAKVYTRK IFNLFQDELV DSQKFVSEKI 240 EVKDGMHIYK VHEFERPKPA YIVSLDFALR TVVCSCHKFE FMGILCSHVL MIFIKKKIHS 300 LPNCYFLDRW TRNATKEKVD DYPNETKKLR PALWFSNIMM HSIGLSERAT RFEKHYQLAQ 360 LRLLQLCEEL DELPYEFEKD CVKGAQVSES NLDNKITLLD PPRAATKGRP RSLRMKSPLE 420 STRKTQKGSS QRQKGQRKNT KLKSKGISLN SDVDATQKST LTLSEAHAM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025883762.1 | 1e-109 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025886302.1 | 1e-106 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2G3CXF4 | 1e-162 | A0A2G3CXF4_CAPCH; Uncharacterized protein | ||||
STRING | Solyc01g110070.1.1 | 1e-105 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA645 | 8 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 2e-26 | FAR1-related sequence 3 |