PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00035g00163.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 280aa MW: 31997.8 Da PI: 8.4195

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00035g00163.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.3	2.9e-09	53	105	36	90
FAR1 36 skegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +g++ +++ e+++r+r e r+gC a++k k + +g wev ++ HnH++ Peaxi162Scf00035g00163.1 53 VAKGQSPLSSNY-EERQRQRLEYRCGCMARIKFKIS-NGIWEVFEFCDGHNHPMI 105 445555555555.89999**************99.*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-6	55	105	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MDFNSFNQET SQLTVKDQLS TEDHNIQNDY AFKIGMKFSS EDESYEAYNS YAVAKGQSPL 60 SSNYEERQRQ RLEYRCGCMA RIKFKISNGI WEVFEFCDGH NHPMIEENLR HFIPSGRKLT 120 SATKEILSSM VDAGIQTKKV VRYLQNEAGG IENAGFIEQD AHNFIQAQSF AVMTLAANDD 180 ESEEIARKHL YQGRVAITKL QSEFYVEGTN KSYPKFTTSI GSSRINDQVF DPIKKKGKGN 240 GYGRLKPNIE QKKKRAPHKT LKARATQQQE QQSSMINFEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	254	KKKGKGNGYGRLKPNIEQKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009628526.1	3e-75	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A314L6H7	1e-74	A0A314L6H7_NICAT; Protein far1-related sequence 5 (Fragment)
STRING	XP_009628526.1	1e-74	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1726	9	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	3e-11	FAR1-related sequence 10