PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00034g00087.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 365aa    MW: 42034.2 Da    PI: 5.1865
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00034g00087.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.8e-14128212286
                  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               W+++e+  L++a  ++  r +r++l+   W+ev++++ +  ++er+ +qC+++++ l+k+ykk+     +    ++s+++yf+++
  Peaxi162Scf00034g00087.1 128 WSEHETFILLDAWGDRFLRHGRKSLRSEEWQEVAERVsQGSKIERTDTQCRNRLDTLKKKYKKEMMKLAET-GSATSKWVYFRKM 211
                               *************************************555678*********************9999985.667779******* PP

                  trihelix  86 e 86 
                               +
  Peaxi162Scf00034g00087.1 212 D 212
                               8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.284126185IPR017877Myb-like domain
PfamPF138375.3E-21127214No hitNo description
Gene3DG3DSA:1.10.10.609.6E-5128191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDDIQDNGRY PPNPYGMNQG YGSSNRLKLP HRNTSYPRHV GHPYVQEADD YEDIDDEEDD  60
NDDENGVQRI GKDVFEDDDD DDYGDSQRHQ KKRKLKSLLS SYEFAPRVPA PSAAPKLSFG  120
GRNPLSDWSE HETFILLDAW GDRFLRHGRK SLRSEEWQEV AERVSQGSKI ERTDTQCRNR  180
LDTLKKKYKK EMMKLAETGS ATSKWVYFRK MDMLLTSTSP QQAGMSCGMD SGEYVFMTPK  240
AYLNRANGLD EARDSPANSE ESADGEEDDS EDLPPKRSRN GQSRRGGASS FKLIADSIHK  300
FSEIYVKIEN SKRQQMLELE KMRMDFHREL ELQKRQIVER ARAEIARIHQ RSDEENDKSA  360
ENVSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609888.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A0V0ISR20.0A0A0V0ISR2_SOLCH; Putative ovule protein
STRINGXP_009609888.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-70Trihelix family protein