PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00033g01322.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 516aa MW: 54899.2 Da PI: 8.0445 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.9 | 2.5e-11 | 36 | 60 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C yG rC+F+H++ Peaxi162Scf00033g01322.1 36 EPDCIYYLRTGVCGYGTRCRFNHPR 60 589********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.5e-11 | 82 | 106 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G +Ck++H++ Peaxi162Scf00033g01322.1 82 QPVCQYYMRTGMCKFGTSCKYHHPK 106 689********************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.4e-11 | 173 | 198 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +Ck++H++ Peaxi162Scf00033g01322.1 173 GEKECSYYMKTGQCKFGITCKYHHPQ 198 6789********************97 PP | |||||||
4 | zf-CCCH | 35.7 | 1.5e-11 | 343 | 369 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++C+++H+p Peaxi162Scf00033g01322.1 343 PGQPECQYYMKYGDCKFGSSCRYHHPP 369 5789*********************97 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 391 | 415 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++a++G Ck+G++CkF H++ Peaxi162Scf00033g01322.1 391 APICSHYAQNGVCKFGPSCKFDHPM 415 589********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.31 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-4 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 36 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 36 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-5 | 39 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 79 | 107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 79 | 106 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 84 | 105 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 171 | 199 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 171 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-9 | 173 | 198 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-6 | 174 | 199 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.464 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-6 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-9 | 344 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 346 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 387 | 414 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 388 | 416 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-7 | 388 | 415 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 391 | 415 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 393 | 413 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 516 aa Download sequence Send to blast |
MEQWTSPASD TGLEEPMWQL SLGSGGPESY PQRANEPDCI YYLRTGVCGY GTRCRFNHPR 60 DRASLVMGLR ASGGEYPERV GQPVCQYYMR TGMCKFGTSC KYHHPKQGGG SSTLVTHNIY 120 GYPLRPVCFF FMFILFLLFP CCIIFHFFPC FSFNKFDHGS IFLILLIELL SQGEKECSYY 180 MKTGQCKFGI TCKYHHPQPA GAQVPPSVAG FGAFPSPVAI SPPATYPALQ SPSVQSAQQY 240 GVVAGNWPVA RPTLLPGSYL PGTYGPMLFP PGLVPMPGWT PYQASGGPVP SPITQSAAGA 300 APVYGLTQLS ASAPAYTGPY MSLTSSAGAS GSIQREHALP EKPGQPECQY YMKYGDCKFG 360 SSCRYHHPPE WSGPKAGFIL SAMGLPLRPG APICSHYAQN GVCKFGPSCK FDHPMGISYS 420 PSASSLVDMP VAPYPVGSSV GTLAPSSSSS DLRPELVSGS SQDAFSNQIS SMSAPSGSVG 480 SMFSKGGSAG AQQSRQSSTS SIASSSTGHE GEAHTS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267356.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 1e-153 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A314KY39 | 0.0 | A0A314KY39_NICAT; Zinc finger ccch domain-containing protein 32 | ||||
STRING | XP_009802825.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-153 | C3H family protein |