![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00031g00241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 333aa MW: 38828.6 Da PI: 4.4261 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.6 | 1.6e-13 | 100 | 187 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikeg.ekkr.tsessstcpyfd 83 Wt++e +L+e+ e+ +l+r++l+ +W ev++k+ + g+e++ +C++ ++ l+k+ykk+ + e+++ + +s++p+f+ Peaxi162Scf00031g00241.1 100 WTEEESFVLLEVWGERFLELGRRSLRSEDWVEVAEKVsEMIGVEKGESECRNQLDALKKKYKKEMAKmERSGgGGGFHSKWPFFK 184 *************************************5568*********************98655055554588899****** PP trihelix 84 qle 86 +++ Peaxi162Scf00031g00241.1 185 KMD 187 **8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.098 | 92 | 157 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.7E-19 | 99 | 189 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MEDSDDESEY PSRPNNNNSI YTPSLRSRRS IRNPSSSSSS YNRNTHYGYN DFHYTNDLDS 60 EEEDDQELSS GENGYDGIPK KRKLESLNYQ FAPRSKGGMW TEEESFVLLE VWGERFLELG 120 RRSLRSEDWV EVAEKVSEMI GVEKGESECR NQLDALKKKY KKEMAKMERS GGGGGFHSKW 180 PFFKKMDMLM NLRMKGHCGL GCGLDSGEYV FMDPRMYLDR SNVLDEMRDS PAGSDAENDD 240 DEEEEEMEQG DDESAKMLAD SIQRFGQIYE KIENSKRKQM MELEKMRRDM QRELELQKKQ 300 IVERAQAEIA KIRDRNDNDD DDDEDNKDNV EKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783625.1 | 1e-148 | PREDICTED: uncharacterized protein LOC104232187 isoform X1 | ||||
Refseq | XP_016496917.1 | 1e-148 | PREDICTED: trihelix transcription factor ASIL1-like isoform X1 | ||||
Refseq | XP_016574195.1 | 1e-148 | PREDICTED: uncharacterized protein LOC107871832 | ||||
TrEMBL | A0A2G2WS77 | 1e-151 | A0A2G2WS77_CAPBA; Uncharacterized protein | ||||
STRING | XP_009783625.1 | 1e-148 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12060 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-73 | Trihelix family protein |