PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00031g00144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 24028 Da PI: 9.6575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.9e-21 | 22 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++aa+++++g+ Peaxi162Scf00031g00144.1 22 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 72 6********.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.3E-14 | 22 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-37 | 22 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-32 | 22 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.89E-20 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 2.3E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAPKEKGGAT IGKVNGSSKE VHYRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAK 60 AYDAAAREFR GAKAKTNFPL DDLKINVVEK KYNDKSYSPS QSSTVESSSR DGAVNVDSSP 120 LDLSLGGSNI GHNSVIFPLQ NHQLRTFGPP TVNHMYYLEA LARAGVINLE KNQPKKTVDF 180 LGGTCGSESD SSSVIDFNHV KPTIKGLNLD LNFPPPENMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 22 | 80 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ259600 | 0.0 | HQ259600.1 Petunia x hybrida ethylene-responsive-element-binding factor 6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001305482.1 | 1e-89 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | E3VVR5 | 1e-162 | E3VVR5_PETHY; Ethylene-responsive-element-binding factor 6 | ||||
STRING | PGSC0003DMT400058751 | 9e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-28 | erf domain protein 9 |