PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00029g00142.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

ARF

Protein Properties

Length: 611aa MW: 67232.4 Da PI: 7.1187

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00029g00142.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.6	2.4e-23	111	211	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD Peaxi162Scf00029g00142.1 111 FAKTLTQSDANNGGGFSVPRYCAETIfpkldfkADPPVQ--TVIAKDVHGQMWQFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGD 193 89***************************95444444..8*************************************** PP EEEEEE-SSSEE..EEEEE- CS B3 79 fvvFkldgrsefelvvkvfr 98 +vvF + +++ l+v+++r Peaxi162Scf00029g00142.1 194 SVVFL--RAENGDLCVGIRR 211 *..4488889**98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.7E-38	103	217	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-30	105	213	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.46E-22	110	211	No hit	No description
SMART	SM01019	2.1E-21	111	213	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-21	111	211	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.816	111	213	IPR003340	B3 DNA binding domain
Pfam	PF06507	4.0E-32	267	350	IPR010525	Auxin response factor
PROSITE profile	PS51745	18.234	500	580	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MKEVMEKCVN SQLWHACAGS MVQIPPVNSK VFYFPQGHAE HTLTNVDFTA LGEIPAMILC 60 RVTAVKFLAY PETDEIYAKI RLISVENKED FEDSCVLGST VAETTEKPTS FAKTLTQSDA 120 NNGGGFSVPR YCAETIFPKL DFKADPPVQT VIAKDVHGQM WQFRHIYRGT PRRHLLTTGW 180 STFVNQKKLV AGDSVVFLRA ENGDLCVGIR RVKRGGIGVL ESQSWWNSAS GNYGGSYAFL 240 KEGENTMMRS GSNGNKGQVS PESVVKAACL AANGQPFEVV YYPRANTPEY CVRASSVNAA 300 MSIQWCSGMR FKMAFETEDS SRISWFMGII SSVQVADPIH WPHSPWRLLQ GARHAQFGVP 360 LLDLHLSKKL QLGLLPPISR PVDADSKISD GITKAQKESN ENISCLLTIG SSSEMLEKAD 420 NLKTPLFLLF GQPILTEQQM SNGCSTNAPS QVQTRRDSSS GTQLKAEKNS LGWKGLSESL 480 SSATFLWNQG YHAAELGMGS SHCKVFLDSE DVGRTLDLSV LGSYEELHRR LADMFQIERL 540 DMMTSVLYRD ATGASRQIGD EPFSDFMKTA KSLTILMNPG SSAARKWLTD LPTAEKCLDS 600 SNQAGSLSIF A

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MKEVMEKCVN SQLWHACAGS MVQIPPVNSK VFYFPQGHAE HTLTNVDFTA LGEIPAMILC  60
RVTAVKFLAY PETDEIYAKI RLISVENKED FEDSCVLGST VAETTEKPTS FAKTLTQSDA  120
NNGGGFSVPR YCAETIFPKL DFKADPPVQT VIAKDVHGQM WQFRHIYRGT PRRHLLTTGW  180
STFVNQKKLV AGDSVVFLRA ENGDLCVGIR RVKRGGIGVL ESQSWWNSAS GNYGGSYAFL  240
KEGENTMMRS GSNGNKGQVS PESVVKAACL AANGQPFEVV YYPRANTPEY CVRASSVNAA  300
MSIQWCSGMR FKMAFETEDS SRISWFMGII SSVQVADPIH WPHSPWRLLQ GARHAQFGVP  360
LLDLHLSKKL QLGLLPPISR PVDADSKISD GITKAQKESN ENISCLLTIG SSSEMLEKAD  420
NLKTPLFLLF GQPILTEQQM SNGCSTNAPS QVQTRRDSSS GTQLKAEKNS LGWKGLSESL  480
SSATFLWNQG YHAAELGMGS SHCKVFLDSE DVGRTLDLSV LGSYEELHRR LADMFQIERL  540
DMMTSVLYRD ATGASRQIGD EPFSDFMKTA KSLTILMNPG SSAARKWLTD LPTAEKCLDS  600
SNQAGSLSIF A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-70	9	350	51	367	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598798.1	0.0	PREDICTED: auxin response factor 18-like isoform X1
Refseq	XP_009598799.1	0.0	PREDICTED: auxin response factor 18-like isoform X1
Refseq	XP_009598800.1	0.0	PREDICTED: auxin response factor 18-like isoform X1
Refseq	XP_018625737.1	0.0	PREDICTED: auxin response factor 18-like isoform X1
Swissprot	Q653H7	1e-163	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A1S4DBY9	0.0	A0A1S4DBY9_TOBAC; Auxin response factor
STRING	XP_009598798.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA592	24	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	1e-153	auxin response factor 16

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]