PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00029g00131.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 544aa MW: 62846.9 Da PI: 8.3052 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.5e-07 | 338 | 379 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e + ++++G++ Wk a ++g + + ++k+ w+ + Peaxi162Scf00029g00131.1 338 KWTEEEYEMVRKFHREHGPK-WKVLADELG--KHRFHVKDTWRRL 379 8*****************99.********9..6788899888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.1E-4 | 262 | 333 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-5 | 265 | 352 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.55 | 335 | 382 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-8 | 337 | 397 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.934 | 338 | 380 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 8.8E-10 | 339 | 397 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-7 | 353 | 391 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.933 | 381 | 449 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 5.98E-5 | 385 | 449 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.021 | 385 | 451 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.0067 | 389 | 446 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-9 | 392 | 449 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.25E-5 | 429 | 504 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.131 | 451 | 504 | IPR017877 | Myb-like domain |
SMART | SM00717 | 89 | 455 | 506 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MVLGDEKEGM LRKQEKKSKK SNKKAAINGL ALTTADVKAI KGDFSFDEEK LTVVETLIQR 60 DKEEMETKAA GEIDQCGVKR KKKRGGNHLR KSNKDSDEDA AEGVEEKKHK LKKSCKDEQQ 120 TMQYAPLDTE KSAPASASET WDNDKVVETF GVVSSGNAVD EIRRKNKSKK SIKTSATSGE 180 VTNTEVNQGA VFPSIEEREE GSRTENGNIR KRKNVKLGQR PEDPIHENSE KRVRFSGHVQ 240 VFPSPNDPSD EKHEIEEETL LRGKRFSKLE DEIIKNAVHK YIEIHNMGEE GLQKILNSRS 300 HPEIKGCWKE IGSAIPYRPY ISVYYRAQVL FRRCETRKWT EEEYEMVRKF HREHGPKWKV 360 LADELGKHRF HVKDTWRRLK LSNQKKGQWT QEEYQTLFDL VNTDLRLKLS EDKKSKYGML 420 RDNIPWSAIS DKLSTRTAPS CCLKWYDQLT SPMVAKGEWA DADDYHLIDA LFVLDASCVE 480 DVDWDNLLDH RPGEICRKRW NQMVLHIDQC GNRSFAEQIE VLAKRYRPDL AEVRETWDSK 540 PIVP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760244.1 | 0.0 | PREDICTED: transcription termination factor 1-like | ||||
Refseq | XP_016471261.1 | 0.0 | PREDICTED: transcription termination factor 1-like | ||||
Refseq | XP_016471262.1 | 0.0 | PREDICTED: transcription termination factor 1-like | ||||
TrEMBL | A0A1S4A3L0 | 0.0 | A0A1S4A3L0_TOBAC; transcription termination factor 1-like | ||||
TrEMBL | A0A1U7VD64 | 0.0 | A0A1U7VD64_NICSY; transcription termination factor 1-like | ||||
STRING | XP_009760244.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-129 | MYB_related family protein |