PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00026g00296.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 299aa    MW: 34363.5 Da    PI: 5.9284
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00026g00296.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1786137556
                               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Peaxi162Scf00026g00296.1  86 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 137
                               57899**********************************************9 PP
2HD-ZIP_I/II126.11.6e-4084175293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               k rrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr+++ +k++n++L++++++
  Peaxi162Scf00026g00296.1  84 KIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKREFEVIKADNDALQAQNQK 168
                               669********************************************************************************** PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L++e+++
  Peaxi162Scf00026g00296.1 169 LHAEIMT 175
                               **99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-1956140IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1975141IPR009057Homeodomain-like
PROSITE profilePS5007116.81179139IPR001356Homeobox domain
SMARTSM003891.2E-1682143IPR001356Homeobox domain
CDDcd000862.85E-1583140No hitNo description
PfamPF000464.9E-1586137IPR001356Homeobox domain
PRINTSPR000311.2E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5119135IPR000047Helix-turn-helix motif
PfamPF021837.4E-16139179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTCTNEMAFF HANFMLQTPH EDDHQPSTSL AHIPSCSPQD YHGVTSLLGK RTMTFSGVED  60
NNQAENHGED DLSDEGSHEA GEKKIRRLNM EQVKTLEKNF ELGNKLEPER KMQLARALGL  120
QPRQIAIWFQ NRRARWKTKQ LEKDYEVLKR EFEVIKADND ALQAQNQKLH AEIMTLKNRE  180
HPTEYYSINL NKETEGSCSN RSENSSEIKL DISRTPPIDS PLISIHQPTS SIPFFPPPTR  240
PTGVAQLFQH ASSRQELIQC NMKIMDQTVK EENLSNMLCG MDDQSAAAFW PWLEQPHYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458352e-75AC245835.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-8i3 map 1, complete sequence.
GenBankAC2467092e-75AC246709.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-58g10 map 1, complete sequence.
GenBankHG9755132e-75HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363243.11e-150PREDICTED: homeobox-leucine zipper protein ATHB-13-like
RefseqXP_015076822.11e-150homeobox-leucine zipper protein ATHB-13-like
RefseqXP_019240060.11e-150PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-110ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1J6K6751e-149A0A1J6K675_NICAT; Homeobox-leucine zipper protein athb-13
STRINGXP_009763971.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-108HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]