PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00025g02322.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 497aa    MW: 56582.2 Da    PI: 7.9138
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00025g02322.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.15.9e-2940123186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                               rW+++e+laL+++r++m+ ++r++ lk+plW+e+s+km+e g++rs+k+C+ek+en+ k++k++k+g+++r+  + +++++f+ql
  Peaxi162Scf00025g02322.1  40 RWPHEETLALLNIRSQMDLAFRDSILKGPLWDEISRKMSELGYNRSAKKCREKFENIYKYHKRTKDGRSGRQ--TGKHYRFFEQL 122
                               8********************************************************************984..5557******9 PP

                  trihelix  86 e 86 
                               e
  Peaxi162Scf00025g02322.1 123 E 123
                               7 PP

2trihelix94.69.7e-30352437186
                  trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                               rW+k ev aLi +r++++ ++++ g++k+plWe++s +m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e+s+tcpyf+ 
  Peaxi162Scf00025g02322.1 352 RWPKAEVEALIGIRTNLDLQYNDnGSSKGPLWEDISGAMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PEDSKTCPYFHI 435
                               8*********************7589********************************************97.9**********8 PP

                  trihelix  85 le 86 
                               l+
  Peaxi162Scf00025g02322.1 436 LD 437
                               87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.6083397IPR017877Myb-like domain
SMARTSM007173.3E-43799IPR001005SANT/Myb domain
PfamPF138373.7E-2039123No hitNo description
CDDcd122031.12E-2439104No hitNo description
PROSITE profilePS500906.748345410IPR017877Myb-like domain
SMARTSM007174.6349412IPR001005SANT/Myb domain
PfamPF138372.4E-22351439No hitNo description
CDDcd122033.86E-22351417No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MLEASADGGG GAAVTQVVEL KNDGSDGGGS GGDKNSSGNR WPHEETLALL NIRSQMDLAF  60
RDSILKGPLW DEISRKMSEL GYNRSAKKCR EKFENIYKYH KRTKDGRSGR QTGKHYRFFE  120
QLELLDNQSS LLPSNHTMSM PVPMPMPMTM IKAATSGCQD FRMDPCRNLQ GFNPEFMSTS  180
TSTTSSSGKE SDGRVLKKRK LAGYFERLVK EVLDKQADLH NKFLEAIEKY EKDRMAREEA  240
WKMQETARIK KEQEALANER AIAAAKDAAV IAFLQKISEQ SVQVQLPLDL SQVSHERHTE  300
ERESESVKPG GSQENVLHQD NDKQQENMLD KNIDKQENDS AGENSFNTSS SRWPKAEVEA  360
LIGIRTNLDL QYNDNGSSKG PLWEDISGAM KKLGYDRNAK RCKEKWENIN KYYRRVKESQ  420
KRRPEDSKTC PYFHILDSIY QNKSKKQMLI SDNPGSNVKA GELLMQIINQ QQQQENQQQQ  480
QQSETGDIYR QSVEQSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267394.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391173e-66TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2G2VFX70.0A0A2G2VFX7_CAPBA; Trihelix transcription factor GTL1
STRINGXP_009626647.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-61Trihelix family protein