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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00023g02913.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 205aa MW: 23526.8 Da PI: 6.3719 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00023g02913.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 83.7 | 1.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
i++k rqvtfskRr+g++KKA+ELS+LCda+vav++fs++g+ly++ss
Peaxi162Scf00023g02913.1 10 LIQDKNSRQVTFSKRRKGLIKKAKELSILCDADVAVVVFSNRGRLYDFSS 59
699*********************************************96 PP
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2 | K-box | 52.3 | 2.5e-18 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
+++ + q ++a + e+Lq+ qR+l d+++L++ +L +Le+q++++l + Rs+K++l++e+++ l +ke+ l+een+
Peaxi162Scf00023g02913.1 80 ISAEASDAEQSKYASIMTIGEMLQTIQRQLEEPDVDDLNVTDLVHLENQIQTALMEARSRKTHLMMESLKSLHEKENLLREENRI 164
566667788999************************************************************************* PP
K-box 94 Lrkkl 98
L k+
Peaxi162Scf00023g02913.1 165 LADKI 169
*9998 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 30.095 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.36E-34 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-30 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.649 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.4E-14 | 86 | 169 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009910 | Biological Process | negative regulation of flower development |
GO:0010221 | Biological Process | negative regulation of vernalization response |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 205 aa
Download sequence Send
to blast |
MGRKKVEIKL IQDKNSRQVT FSKRRKGLIK KAKELSILCD ADVAVVVFSN RGRLYDFSSN 60 NSLTEIVQRY HSHVEAEKEI SAEASDAEQS KYASIMTIGE MLQTIQRQLE EPDVDDLNVT 120 DLVHLENQIQ TALMEARSRK THLMMESLKS LHEKENLLRE ENRILADKIS MTTNTREVNG 180 MDLDFTNLAT IQPIGEQQRA TLNFF
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-17 | 1 | 76 | 1 | 75 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269|PubMed:12724541, ECO:0000269|PubMed:19139056, ECO:0000269|PubMed:20551443}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY370529 | 0.0 | AY370529.1 Petunia x hybrida MADS-box protein 15 (PMADS15) mRNA, complete cds. |