PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00022g00098.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MIKC_MADS
Protein Properties Length: 270aa    MW: 31152.6 Da    PI: 10.2154
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00022g00098.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-3167116150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Peaxi162Scf00022g00098.1  67 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 116
                               79***********************************************8 PP

2K-box95.39.7e-32135224493
                     K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                               s++ s +ea+a+++qqe++kL+++i nLq+++R++lGe+L  L+l++L++Leq++ek+++kiR+kKnell+++ie++qk+  e++
  Peaxi162Scf00022g00098.1 135 SNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKRIAETE 219
                               4444599**************************************************************************9999 PP

                     K-box  89 eenka 93 
                               + +++
  Peaxi162Scf00022g00098.1 220 RSQQM 224
                               88765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.66959119IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-4159118IPR002100Transcription factor, MADS-box
CDDcd002652.04E-4560136No hitNo description
SuperFamilySSF554554.45E-3360132IPR002100Transcription factor, MADS-box
PROSITE patternPS00350061115IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-336181IPR002100Transcription factor, MADS-box
PfamPF003191.1E-2668115IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-338196IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-3396117IPR002100Transcription factor, MADS-box
PfamPF014864.5E-22143222IPR002487Transcription factor, K-box
PROSITE profilePS5129713.017145230IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKKVEKRKLN LLYMSLSITG HIDKFMSFFP KKQVTFWHDG AAMEFQSDLT REISPQRKLG  60
RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSSRG RLYEYANNSV  120
KATIERYKKA CSDSSNTGSI AEANAQYYQQ EASKLRAQIG NLQNQNRNFL GESLAALNLR  180
DLRNLEQKIE KGISKIRAKK NELLFAEIEY MQKRIAETER SQQMNLMPGS SSYDLVPPQQ  240
SFDARNYLQV NGLQTNNHYP RQDQPPLQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-2059127169Myocyte-specific enhancer factor 2B
1tqe_Q3e-2059127169Myocyte-specific enhancer factor 2B
1tqe_R3e-2059127169Myocyte-specific enhancer factor 2B
1tqe_S3e-2059127169Myocyte-specific enhancer factor 2B
6c9l_A3e-2059127169Myocyte-specific enhancer factor 2B
6c9l_B3e-2059127169Myocyte-specific enhancer factor 2B
6c9l_C3e-2059127169Myocyte-specific enhancer factor 2B
6c9l_D3e-2059127169Myocyte-specific enhancer factor 2B
6c9l_E3e-2059127169Myocyte-specific enhancer factor 2B
6c9l_F3e-2059127169Myocyte-specific enhancer factor 2B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
118KKVEKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX729120.0X72912.1 P.hybrida pMADS3 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233178.11e-151PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_019233179.11e-151PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_019233180.11e-151PREDICTED: floral homeotic protein AGAMOUS isoform X3
SwissprotQ408851e-164AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A1J6KBS91e-149A0A1J6KBS9_NICAT; Floral homeotic protein agamous
STRINGXP_009802759.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]