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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00021g00015.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 253aa MW: 28665.7 Da PI: 9.1883 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00021g00015.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.9 | 9.7e-32 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+
Peaxi162Scf00021g00015.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 57
79**********************************************9 PP
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2 | K-box | 102.7 | 4.9e-34 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
e++++s++qe++kLk + e Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+eel++ke+ l + nk+
Peaxi162Scf00021g00015.1 80 CGERETQSWYQEVSKLKGKFEALQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTQIMMEQMEELRRKERHLGDVNKQ 164
67899******************************************************************************** PP
K-box 94 Lrkkl 98
L+ k+
Peaxi162Scf00021g00015.1 165 LKVKV 169
*9886 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 33.319 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.7E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.44E-44 | 2 | 72 | No hit | No description |
SuperFamily | SSF55455 | 1.16E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.2E-30 | 82 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.677 | 85 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009553 | Biological Process | embryo sac development |
GO:0009911 | Biological Process | positive regulation of flower development |
GO:0010094 | Biological Process | specification of carpel identity |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048455 | Biological Process | stamen formation |
GO:0048459 | Biological Process | floral whorl structural organization |
GO:0048509 | Biological Process | regulation of meristem development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0080060 | Biological Process | integument development |
GO:0080112 | Biological Process | seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGNA 60 GITKTLERYQ RCCLNPQDNC GERETQSWYQ EVSKLKGKFE ALQRTQRHLL GEDLGPLSVK 120 ELQNLEKQLE GALAQARQRK TQIMMEQMEE LRRKERHLGD VNKQLKVKVS LELSSLEAEG 180 QAGLNRALPF LWTSNALEAG NSNFPVHHSQ SNPMDCGPDP VLHIGYHHYM AADGPSGSRS 240 MAVETNIMQG WGL
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 2e-23 | 76 | 170 | 4 | 102 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-23 | 76 | 170 | 4 | 102 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-23 | 76 | 170 | 4 | 102 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-23 | 76 | 170 | 4 | 102 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |